Evidence map›Paper›PMID 36239373›Full record

ArticleeLife2022

Dynamic proteomic and phosphoproteomic atlas of corticostriatal axons in neurodevelopment.

Vasin Dumrongprechachan, Ryan B Salisbury, Lindsey Butler, Matthew L MacDonald, Yevgenia Kozorovitskiy

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Vasin DumrongprechachanDepartment of Neurobiology, Northwestern University, Evanston, United States.ORCID 0000-0001-5890-6778
Ryan B SalisburyDepartment of Psychiatry, University of Pittsburgh, Pittsburgh, United States.
Lindsey ButlerDepartment of Neurobiology, Northwestern University, Evanston, United States.
Matthew L MacDonaldDepartment of Psychiatry, University of Pittsburgh, Pittsburgh, United States.ORCID 0000-0002-2222-2996
Yevgenia KozorovitskiyDepartment of Neurobiology, Northwestern University, Evanston, United States.ORCID 0000-0002-3710-1484
University of Pittsburgh · US

Funding

Research Training in Cell and Molecular BiologyT32GM145388 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Jorge Torres · 2022 to 2026
$5.2M
Synaptic Protein Networks, Genetic Risk, and Spine Loss in SchizophreniaR01MH118497 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MACDONALD, MATTHEW L · 2019 to 2023
$2.5M
Neurohypophyseal regulation of midbrain dopamine systems.R01MH117111 · NIMH · NORTHWESTERN UNIVERSITY · PI KOZOROVITSKIY, YEVGENIA · 2018 to 2022
$2.0M
Mechanisms of striatal structural and functional plasticity.R01NS107539 · NINDS · NORTHWESTERN UNIVERSITY · PI KOZOROVITSKIY, YEVGENIA · 2018 to 2022
$1.7M
Interrogating and sculpting synapses and circuits for rapidly acting antidepressant effectsR56MH113923 · NIMH · NORTHWESTERN UNIVERSITY · PI KOZOROVITSKIY, YEVGENIA · 2017 to 2017
$450k
NIGMS NIH HHS T32 GM145388NIMH NIH HHS R01 MH117111NIMH NIH HHS R01 MH118497NIMH NIH HHS R56 MH113923NINDS NIH HHS R01 NS107539
6 · The paper itself

Abstract

Mammalian axonal development begins in embryonic stages and continues postnatally. After birth, axonal proteomic landscape changes rapidly, coordinated by transcription, protein turnover, and post-translational modifications. Comprehensive profiling of axonal proteomes across neurodevelopment is limited, with most studies lacking cell-type and neural circuit specificity, resulting in substantial information loss. We create a Cre-dependent APEX2 reporter mouse line and map cell-type-specific proteome of corticostriatal projections across postnatal development. We synthesize analysis frameworks to define temporal patterns of axonal proteome and phosphoproteome, identifying co-regulated proteins and phosphorylations associated with genetic risk for human brain disorders. We discover proline-directed kinases as major developmental regulators. APEX2 transgenic reporter proximity labeling offers flexible strategies for subcellular proteomics with cell type specificity in early neurodevelopment, a critical period for neuropsychiatric disease.

Indexed as

ProteomeProteomicsAnimalsAxonsHumansMammalsMiceNeurogenesisPhosphorylationProteomeaxoncorticostriataldevelopmentmouseneuroproteomicsneurosciencephosphoproteomics

Identifiers

PMID36239373
PMCPMC9629834
OpenAlexW4306174702

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.