Evidence map›Paper›PMID 36257983›Full record

ArticleCommunications biology2022

Direct experimental observation of blue-light-induced conformational change and intermolecular interactions of cryptochrome.

Pei Li, Huaqiang Cheng, Vikash Kumar, Cecylia Severin Lupala, Xuanxuan Li, Yingchen Shi, Chongjun Ma, Keehyoung Joo, Jooyoung Lee, Haiguang Liu and 1 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. The Quantum Environment in Cryptochrome Enhances Light Absorption of FAD.bioRxiv : the preprint server for biology · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Dynamics and mechanism of DNA repair by a bifunctional cryptochrome.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. A structural decryption of cryptochromes.Frontiers in chemistry · 2024
    Review
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Pei Li *State Key Laboratory of Surface Physics, Department of Physics, Fudan University, 200433, Shanghai, China.
Huaqiang Cheng *State Key Laboratory of Surface Physics, Department of Physics, Fudan University, 200433, Shanghai, China.ORCID 0000-0003-4176-160X
Vikash KumarBeijing Computational Science Research Center, 100193, Beijing, China.
Cecylia Severin LupalaBeijing Computational Science Research Center, 100193, Beijing, China.ORCID 0000-0002-6987-5230
Xuanxuan LiBeijing Computational Science Research Center, 100193, Beijing, China.
Yingchen ShiBeijing Computational Science Research Center, 100193, Beijing, China.ORCID 0000-0003-4682-3195
Chongjun MaState Key Laboratory of Surface Physics, Department of Physics, Fudan University, 200433, Shanghai, China.
Keehyoung JooCenter for Advanced Computation, Korea Institute for Advanced Study, Seoul, 02455, Republic of Korea.ORCID 0000-0002-4612-0927
Jooyoung LeeSchool of Computational Sciences, Korea Institute for Advanced Study, Seoul, 02455, Republic of Korea.
Haiguang LiuBeijing Computational Science Research Center, 100193, Beijing, China. hgliu@csrc.ac.cn.ORCID 0000-0001-7324-6632
Yan-Wen TanState Key Laboratory of Surface Physics, Department of Physics, Fudan University, 200433, Shanghai, China. ywtan@fudan.edu.cn.ORCID 0000-0002-5522-7996
Beijing Computational Science Research Center · CNFudan University · CNKorea Institute for Advanced Study · KRMicrosoft (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cryptochromes are blue light receptors that mediate circadian rhythm and magnetic sensing in various organisms. A typical cryptochrome consists of a conserved photolyase homology region domain and a varying carboxyl-terminal extension across species. The structure of the flexible carboxyl-terminal extension and how carboxyl-terminal extension participates in cryptochrome's signaling function remain mostly unknown. In this study, we uncover the potential missing link between carboxyl-terminal extension conformational changes and downstream signaling functions. Specifically, we discover that the blue-light induced opening of carboxyl-terminal extension in C. reinhardtii animal-like cryptochrome can structurally facilitate its interaction with Rhythm Of Chloroplast 15, a circadian-clock-related protein. Our finding is made possible by two technical advances. Using single-molecule Förster resonance energy transfer technique, we directly observe the displacement of carboxyl-terminal extension by about 15 Å upon blue light excitation. Combining structure prediction and solution X-ray scattering methods, we propose plausible structures of full-length cryptochrome under dark and lit conditions. The structures provide molecular basis for light active conformational changes of cryptochrome and downstream regulatory functions.

Indexed as

Circadian ClocksDeoxyribodipyrimidine Photo-LyaseAnimalsCircadian RhythmCryptochromesLightCryptochromesDeoxyribodipyrimidine Photo-Lyase

Identifiers

PMID36257983
PMCPMC9579160
OpenAlexW4306677442

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.