Evidence map›Paper›PMID 36264309›Full record

ArticleBiochemistry2022

LC3B Binds to the Autophagy Protease ATG4b with High Affinity Using a Bipartite Interface.

Yinyan Tang, Amber Kay, Ziwen Jiang, Michelle R Arkin

Open access · hybridAbstract read
In one paragraph

Article in Biochemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. The Activation of GABAAntioxidants (Basel, Switzerland) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yinyan Tang
Amber Kay
University of California, San Francisco · US

Funding

Translational Studies Linking Aging and CancerR01AG044515 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ARKIN, MICHELLE · 2013 to 2017
$1.6M
Understanding the effects of p97 protein-protein interactions on cellular functions using antibody-based inhibitorsF32GM139242 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JIANG, ZIWEN · 2021 to 2023
$205k
CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001ENIA NIH HHS R01 AG044515NIGMS NIH HHS F32 GM139242
6 · The paper itself

Abstract

Autophagy is a catabolic cellular process in which unwanted proteins and organelles are degraded by lysosomes. It is characterized by the formation of the double-membrane autophagosome decorated with LC3B, a protein that mediates autophagosomal fusion with lysosomes. The cysteine protease ATG4b acts at two stages in the life cycle of LC3B. We set out to characterize the protein-protein interaction between LC3B and ATG4b. Through biochemical and biophysical studies, we show that the ubiquitin-like core of LC3B (residues 1-115; "LC3B-115"), which lacks the C-terminal cleavage site (between residue 120 and 121), binds to full-length ATG4b with a surprisingly tight dissociation constant (

Indexed as

Cysteine EndopeptidasesPeptide HydrolasesAutophagyAutophagy-Related Protein 8 FamilyAutophagy-Related ProteinsMicrotubule-Associated ProteinsPeptidesAutophagy-Related Protein 8 FamilyAutophagy-Related ProteinsCysteine EndopeptidasesMicrotubule-Associated ProteinsPeptide HydrolasesPeptides

Identifiers

PMID36264309
PMCPMC9631991
OpenAlexW4306884771

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.