Evidence map›Paper›PMID 36268024›Full record

ArticleFrontiers in immunology2022

Rare variants and HLA haplotypes associated in patients with neuromyelitis optica spectrum disorders.

Inna Tabansky, Akemi J Tanaka, Jiayao Wang, Guanglan Zhang, Irena Dujmovic, Simone Mader, Venkatesh Jeganathan, Tracey DeAngelis, Michael Funaro, Asaff Harel and 17 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 14 institutions in 3 countries.

Inna TabanskyDepartment of Neurology, Donald and Barbra Zucker School of Medicine at Hofstra/Northwell, Hempstead, NY, United States.
Akemi J TanakaDepartment of Pediatrics, Columbia University College of Physicians and Surgeons, New York, NY, United States.
Jiayao WangDepartment of Pediatrics, Columbia University College of Physicians and Surgeons, New York, NY, United States.
Guanglan ZhangDepartment of Computer Science, Boston University, Boston, MA, United States.
Irena DujmovicClinical Center of Serbia University School of Medicine, Belgrade, Serbia.
Simone MaderInstitute of Molecular Medicine, The Feinstein Institutes for Medical Research, Manhasset, NY, United States.
Venkatesh JeganathanInstitute of Molecular Medicine, The Feinstein Institutes for Medical Research, Manhasset, NY, United States.
Tracey DeAngelisDepartment of Neurology, Neurological Associates of Long Island, New Hyde Park, NY, United States.
Michael FunaroDepartment of Neurology, Donald and Barbra Zucker School of Medicine at Hofstra/Northwell, Hempstead, NY, United States.
Asaff HarelDepartment of Neurology, Lenox Hill Hospital, Northwell Health, New York, NY, United States.
Mark MessinaDepartment of Neurology, Donald and Barbra Zucker School of Medicine at Hofstra/Northwell, Hempstead, NY, United States.
Maya ShabbirInstitute of Molecular Medicine, The Feinstein Institutes for Medical Research, Manhasset, NY, United States.
Vishaan NurseyInstitute of Molecular Medicine, The Feinstein Institutes for Medical Research, Manhasset, NY, United States.
William DeGouviaDepartment of Neurology, Donald and Barbra Zucker School of Medicine at Hofstra/Northwell, Hempstead, NY, United States.
Micheline LaurentDepartment of Neurology, Donald and Barbra Zucker School of Medicine at Hofstra/Northwell, Hempstead, NY, United States.
Karen BlitzDepartment of Neurology, South Shore Neurologic Associates, Patchogue, NY, United States.
Peter JindraDivision of Abdominal Transplantation, Baylor College of Medicine, Baylor College of Medicine, Houston, TX, United States.
Mark GudesblattBiomedical Center and University Hospitals, Ludwig Maximilian University Munich, Munich, Germany.
Regeneron Genetics Center
Alejandra KingRegeneron Genetics Center, Regeneron Pharmaceuticals Inc., Tarrytown, NY, United States.
Jelena DrulovicClinical Center of Serbia University School of Medicine, Belgrade, Serbia.
Edmond YunisDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, United States.
Vladimir BrusicSchool of Computer Science, University of Nottingham Ningbo China, Ningbo, China.
Yufeng ShenDepartment of Biomedical Informatics and Department of Systems Biology, Columbia University, New York, NY, United States.
Derin B KeskinDepartment of Translational Immuno-Genomics for Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA, United States.
Souhel NajjarDepartment of Neurology, Lenox Hill Hospital, Northwell Health, New York, NY, United States.
Joel N H SternDepartment of Neurology, Donald and Barbra Zucker School of Medicine at Hofstra/Northwell, Hempstead, NY, United States.
Donald & Barbara Zucker School of Medicine at Hofstra/Northwell · USFeinstein Institute for Medical Research · USColumbia University · USLudwig-Maximilians-Universität München · DENorthwell Health · USBaylor College of Medicine · USBoston University · USDana-Farber Cancer Institute · USMassachusetts Institute of Technology · USRegeneron (United States) · USRockefeller University · USUniversity of North Carolina at Chapel Hill · USUniversity of Nottingham Ningbo China · CNUrology Associates · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neuromyelitis optica spectrum disorders (NMOSD) are rare, debilitating autoimmune diseases of the central nervous system. Many NMOSD patients have antibodies to Aquaporin-4 (AQP4). Prior studies show associations of NMOSD with individual Human Leukocyte Antigen (HLA) alleles and with mutations in the complement pathway and potassium channels. HLA allele associations with NMOSD are inconsistent between populations, suggesting complex relationships between the identified alleles and risk of disease. We used a retrospective case-control approach to identify contributing genetic variants in patients who met the diagnostic criteria for NMOSD and their unaffected family members. Potentially deleterious variants identified in NMOSD patients were compared to members of their families who do not have the disease and to existing databases of human genetic variation. HLA sequences from patients from Belgrade, Serbia, were compared to the frequency of HLA haplotypes in the general population in Belgrade. We analyzed exome sequencing on 40 NMOSD patients and identified rare inherited variants in the complement pathway and potassium channel genes. Haplotype analysis further detected two haplotypes, HLA-A*01, B*08, DRB1*03 and HLA-A*01, B*08, C*07, DRB1*03, DQB1*02, which were more prevalent in NMOSD patients than in unaffected individuals.

Indexed as

Neuromyelitis OpticaAquaporin 4HaplotypesHLA AntigensHumansPotassium ChannelsRetrospective StudiesAquaporin 4HLA AntigensPotassium Channelsantibody mediatedautoimmunityexome sequencinghuman leukocyte antigenneuromyelitis optica spectrum disorders

Identifiers

PMID36268024
PMCPMC9578444
OpenAlexW4300978726

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.