Evidence map›Paper›PMID 36277882›Full record

ArticleBioMed research international2022

Subtype Classification, Immune Infiltration, and Prognosis Analysis of Lung Adenocarcinoma Based on Pyroptosis-Related Genes.

Qi Liu, Liguang Fang, Chundi Gao, Cun Liu, Haiyang Yu, Jibiao Wu, Lin Hou, Changgang Sun

Abstract read
In one paragraph

Article in BioMed research international, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

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No citing paper in PubMed yet.

4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Qi LiuCollege of First Clinical Medicine, Shandong University of Traditional Chinese Medicine, Jinan, 250014 Shandong, China.
Liguang FangCollege of First Clinical Medicine, Shandong University of Traditional Chinese Medicine, Jinan, 250014 Shandong, China.
Chundi GaoCollege of First Clinical Medicine, Shandong University of Traditional Chinese Medicine, Jinan, 250014 Shandong, China.ORCID https://orcid.org/0000-0002-0795-0370
Cun LiuCollege of Chinese Medicine, Weifang Medical University, Weifang, 261000 Shandong, China.ORCID https://orcid.org/0000-0001-8197-9000
Haiyang YuState Key Laboratory of Component-based Chinese Medicine, Tianjin University of Traditional Chinese Medicine, Tianjin 301617, China.
Jibiao WuCollege of Chinese Medicine, Shandong University of Traditional Chinese Medicine, Jinan, 250014 Shandong, China.
Lin HouQingdao Academy of Chinese Medical Sciences, Shandong University of Traditional Chinese Medicine, Qingdao, 266112 Shandong, China.
Changgang SunCollege of Chinese Medicine, Weifang Medical University, Weifang, 261000 Shandong, China.ORCID https://orcid.org/0000-0003-0778-8788

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The effect of pyroptosis-related genes (PRGs) on the tumor microenvironment (TME) in lung adenocarcinoma (LUAD) remains unclear. Thus, this study is aimed at evaluating the prognostic value of PRGs in patients with LUAD and to elucidate their role in the TME and their effect on immunotherapy. Transcriptomic and clinical data were obtained from the Cancer Genome Atlas and the Gene Expression Omnibus databases (GSE3141, GSE31210). Patients with LUAD were classified using consistent clustering, and the differences in the TME for each type were determined using the ESTIMATE and CIBERSORT algorithms. PRGs were screened using univariate regression analysis, and a prognostic risk model was constructed using LASSO regression analysis. The tumor mutational burden and the tumor immune dysfunction and exclusion algorithms were used to predict therapeutic sensitivity in LUAD patients. Then, we evaluated the potential therapeutic interventions using the GDSC database. LUAD patients in cluster 2 had significantly shorter overall survival and progression-free survival rates, lower immune scores, and higher infiltration of T follicular helper cells than those in cluster 1. We used five PRGs to classify patients with LUAD into different risks groups and found that the high-risk group is sensitive to immunotherapy; however, its immune-related pathways were inhibited, which may be related to tumor metabolic reprogramming. Lastly, we identified several potential therapeutic drugs for application in low-risk patients who were less sensitive to immunotherapy. Overall, our findings showed that PRGs can be used to predict prognosis and may aid in the development of personalized therapeutic strategies in LUAD patients.

Indexed as

Adenocarcinoma of LungLung NeoplasmsBiomarkers, TumorHumansPrognosisPyroptosisTumor MicroenvironmentBiomarkers, Tumor

Identifiers

PMID36277882
PMCPMC9581708

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.