Evidence map›Paper›PMID 36291149›Full record

ArticleCells2022

RNA Sequencing of Intestinal Enterocytes Pre- and Post-Roux-en-Y Gastric Bypass Reveals Alteration in Gene Expression Related to Enterocyte Differentiation, Restitution, and Obesity with Regulation by Schlafen 12.

Emilie E Vomhof-DeKrey, Sonalika Singhal, Sandeep K Singhal, Allie D Stover, Odele Rajpathy, Elizabeth Preszler, Luis Garcia, Marc D Basson

Open access · goldAbstract read
In one paragraph

Article in Cells, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Emilie E Vomhof-DeKreyDepartment of Surgery, School of Medicine and the Health Sciences, University of North Dakota, Grand Forks, ND 58202, USA.ORCID 0000-0003-3818-5330
Sonalika SinghalDepartment of Pathology, School of Medicine and the Health Sciences, University of North Dakota, Grand Forks, ND 58202, USA.ORCID 0000-0002-2046-5775
Sandeep K SinghalDepartment of Pathology, School of Medicine and the Health Sciences, University of North Dakota, Grand Forks, ND 58202, USA.ORCID 0000-0002-3486-067X
Allie D StoverDepartment of Biomedical Sciences, School of Medicine and the Health Sciences, University of North Dakota, Grand Forks, ND 58202, USA.
Odele RajpathyDepartment of Biomedical Sciences, School of Medicine and the Health Sciences, University of North Dakota, Grand Forks, ND 58202, USA.
Elizabeth PreszlerDepartment of Biomedical Sciences, School of Medicine and the Health Sciences, University of North Dakota, Grand Forks, ND 58202, USA.
Luis GarciaSanford Health Clinic, Sioux Falls, ND 57117, USA.
Marc D BassonDepartment of Surgery, School of Medicine and the Health Sciences, University of North Dakota, Grand Forks, ND 58202, USA.ORCID 0000-0001-9696-2789
University of North Dakota · USSanford Health · US

Funding

The role of class IIa Hdac in regulating cell fate choice in early cortical development.P20GM104360 · NIGMS · UNIVERSITY OF NORTH DAKOTA · PI ROCHE, BENJAMIN · 2013 to 2023
$21.1M
Tracking and Evaluation CoreU54GM128729 · NIGMS · UNIVERSITY OF NORTH DAKOTA · PI BASSON, MARC D. · 2018 to 2022
$20.3M
Schlafen mediation of intestinal differentiationR01DK096137 · NIDDK · UNIVERSITY OF NORTH DAKOTA · PI BASSON, MARC D. · 2014 to 2017
$1.5M
NIDDK NIH HHS R01 DK096137NIGMS NIH HHS P20 GM104360NIGMS NIH HHS U54 GM128729
6 · The paper itself

Abstract

backgroundThe intestinal lining renews itself in a programmed fashion that can be affected by adaptation to surgical procedures such as gastric bypass.

methodsTo assess adaptive mechanisms in the human intestine after Roux-en-Y gastric bypass (RYGB), we biopsied proximal jejunum at the anastomotic site during surgery to establish a baseline and endoscopically re-biopsied the same area 6-9 months after bypass for comparison. Laser microdissection was performed on pre- and post-RYGB biopsies to isolate enterocytes for RNA sequencing.

resultsRNA sequencing suggested significant decreases in gene expression associated with G2/M DNA damage checkpoint regulation of the cell cycle pathway, and significant increases in gene expression associated with the CDP-diacylglycerol biosynthesis pathway TCA cycle II pathway, and pyrimidine ribonucleotide salvage pathway after RYGB. Since Schlafen 12 (SLFN12) is reported to influence enterocytic differentiation, we stained mucosa for SLFN12 and observed increased SLFN12 immunoreactivity. We investigated SLFN12 overexpression in HIEC-6 and FHs 74 Int intestinal epithelial cells and observed similar increased expression of the following genes that were also increased after RYGB: HES2, CARD9, SLC19A2, FBXW7, STXBP4, SPARCL1, and UTS.

conclusionsOur data suggest that RYGB promotes SLFN12 protein expression, cellular mechanism and replication pathways, and genes associated with differentiation and restitution (HES2, CARD9, SLC19A2), as well as obesity-related genes (FBXW7, STXBP4, SPARCL1, UTS).

Indexed as

Cell DifferentiationEnterocytesGastric BypassGene Expression RegulationIntracellular Signaling Peptides and ProteinsObesityCytidine Diphosphate DiglyceridesF-Box-WD Repeat-Containing Protein 7Gene ExpressionHumansIntestinesMembrane Transport ProteinsSequence Analysis, RNAVesicular Transport ProteinsCytidine Diphosphate DiglyceridesF-Box-WD Repeat-Containing Protein 7Intracellular Signaling Peptides and ProteinsMembrane Transport ProteinsSLC19A2 protein, humanSLFN12 protein, humanSTXBP4 protein, humanVesicular Transport Proteinsenterocytesintestinal epithelial cellslaser microdissectionobesitySchlafen 12 (SLFN12)weight loss

Identifiers

PMID36291149
PMCPMC9601224
OpenAlexW4306736914

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.