Evidence map›Paper›PMID 36296373›Full record

ArticleMolecules (Basel, Switzerland)2022

The Hydrolysis Rate of Paraoxonase-1 Q and R Isoenzymes: An In Silico Study Based on In Vitro Data.

Sedat Karabulut, Basel Mansour, Gerardo M Casanola-Martin, Bakhtiyor Rasulev, James W Gauld

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Paraoxonase 1 and atherosclerosis.Frontiers in cardiovascular medicine · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Sedat KarabulutDepartment of Chemistry and Biochemistry, University of Windsor, Windsor, ON N9B 3P4, Canada.ORCID 0000-0002-3311-2768
Basel MansourDepartment of Chemistry and Biochemistry, University of Windsor, Windsor, ON N9B 3P4, Canada.ORCID 0000-0001-9036-338X
Gerardo M Casanola-MartinDepartment of Coatings and Polymeric Materials, North Dakota State University, 1735 NDSU Research Park Dr, Fargo, ND 58102, USA.
Bakhtiyor RasulevDepartment of Coatings and Polymeric Materials, North Dakota State University, 1735 NDSU Research Park Dr, Fargo, ND 58102, USA.ORCID 0000-0002-7845-4884
James W GauldDepartment of Chemistry and Biochemistry, University of Windsor, Windsor, ON N9B 3P4, Canada.ORCID 0000-0002-2956-9781
University of Windsor · CANorth Dakota State University · US

Funding

Extreme Science and Engineering Discovery Environment TG-DMR110088National Science Foundation 2019077National Science Foundation IIA-1355466Natural Sciences and Engineering Research Council 04840-201
6 · The paper itself

Abstract

Human serum paraoxonase-1 (PON1) is an important hydrolase-type enzyme found in numerous tissues. Notably, it can exist in two isozyme-forms, Q and R, that exhibit different activities. This study presents an in silico (QSAR, Docking, MD and QM/MM) study of a set of compounds on the activity towards the PON1 isoenzymes (QPON1 and RPON1). Different rates of reaction for the Q and R isoenzymes were analyzed by modelling the effect of Q192R mutation on active sites. It was concluded that the Q192R mutation is not even close to the active site, while it is still changing the geometry of it. Using the combined genetic algorithm with multiple linear regression (GA-MLR) technique, several QSAR models were developed and relative activity rates of the isozymes of PON1 explained. From these, two QSAR models were selected, one each for the QPON1 and RPON1. Best selected models are four-variable MLR models for both Q and R isozymes with squared correlation coefficient R

Indexed as

AryldialkylphosphataseIsoenzymesHumansHydrolysisLinear ModelsMultivariate AnalysisAryldialkylphosphataseIsoenzymesPON1 protein, humanisoenzymesmolecular dockingmolecular dynamicsmolecular modelingPON1QM/MMQSARRPON1

Identifiers

PMID36296373
PMCPMC9607273
OpenAlexW4304187590

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.