Evidence map›Paper›PMID 36300658›Full record

ArticleJournal of the American Heart Association2022

Dysregulated Genes, MicroRNAs, Biological Pathways, and Gastrocnemius Muscle Fiber Types Associated With Progression of Peripheral Artery Disease: A Preliminary Analysis.

Sunil K Saini, Daniel Pérez-Cremades, Henry S Cheng, Kate Kosmac, Charlotte A Peterson, Lingyu Li, Lu Tian, Gengfu Dong, Kevin K Wu, Brian Bouverat and 7 more

Open access · goldAbstract read
In one paragraph

Article in Journal of the American Heart Association, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 3 countries.

Sunil K SainiAll India Institute of Medical Sciences, Department of Biophysics New Delhi India.ORCID 0000-0002-1124-5930
Daniel Pérez-CremadesCardiovascular Division, Department of Medicine Brigham and Women's Hospital and Harvard Medical School Boston MA.ORCID 0000-0002-0969-8762
Henry S ChengCardiovascular Division, Department of Medicine Brigham and Women's Hospital and Harvard Medical School Boston MA.
Kate KosmacCenter for Muscle Biology, College of Health Sciences University of Kentucky Lexington KY.
Charlotte A PetersonCenter for Muscle Biology, College of Health Sciences University of Kentucky Lexington KY.ORCID 0000-0001-9340-0705
Lingyu LiDepartment of Preventive Medicine, Northwestern University Feinberg School of Medicine Chicago IL.
Lu TianDepartment of Health Research and Policy, Stanford University Stanford CA.
Gengfu DongDepartment of Applied Physiology & Kinesiology, University of Florida Gainesville FL.ORCID 0000-0003-1438-8467
Kevin K WuDepartment of Aging and Geriatric Research, University of Florida, Institute on Aging Gainesville FL.
Brian BouveratDepartment of Aging and Geriatric Research, University of Florida, Institute on Aging Gainesville FL.
Stephanie E WohlgemuthDepartment of Aging and Geriatric Research, University of Florida, Institute on Aging Gainesville FL.
Terence RyanDepartment of Applied Physiology & Kinesiology, University of Florida Gainesville FL.ORCID 0000-0003-0780-029X
Robert L SufitDepartment of Medicine, Northwestern University Feinberg School of Medicine Chicago IL.ORCID 0000-0001-8827-2753
Luigi FerrucciDivision of Intramural Research, National Institute on Aging Baltimore MD.ORCID 0000-0002-6273-1613
Mary M McDermottDepartment of Preventive Medicine, Northwestern University Feinberg School of Medicine Chicago IL.ORCID 0000-0002-3724-7619
Christiaan LeeuwenburghDepartment of Aging and Geriatric Research, University of Florida, Institute on Aging Gainesville FL.ORCID 0000-0003-0826-4257
Mark W FeinbergCardiovascular Division, Department of Medicine Brigham and Women's Hospital and Harvard Medical School Boston MA.ORCID 0000-0001-9523-3859
University of Florida · USBrigham and Women's Hospital · USNorthwestern University · USUniversity of Kentucky · USAll India Institute of Medical Sciences · INInstitute on Aging · USStanford University · US

Funding

University of Florida Older Americans Independence Center (OAIC)P30AG028740 · NIA · UNIVERSITY OF FLORIDA · PI Stephen D Anton · 2007 to 2026
$22.8M
MiR-181b, endothelial cells, and vascular inflammationR01HL115141 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI FEINBERG, MARK W · 2012 to 2024
$6.8M
PROgenitor Cell Release Plus Exercise To Improve Functional Performance In PADR01HL107510 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI MCDERMOTT, MARY MCGRAE · 2011 to 2015
$5.6M
TELmisartan plus EXercise to improve functioning in PAD: The TELEX TrialR01HL126117 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI MCDERMOTT, MARY MCGRAE · 2015 to 2019
$3.7M
Low InTensity Exercise Intervention for Peripheral Artery Disease: The LITE TrialR01HL122846 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI MCDERMOTT, MARY MCGRAE · 2015 to 2018
$3.0M
miR-615, AKT/eNOS signaling, and angiogenesisR01HL148207 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI FEINBERG, MARK W · 2020 to 2023
$2.6M
LncRNA SNHG12, vascular senescence, and atherosclerosisR01HL148355 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI FEINBERG, MARK W · 2020 to 2023
$2.5M
KLF10, CD4+ T cells, and transplant arteriopathyR01HL134849 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI FEINBERG, MARK W · 2017 to 2020
$1.7M
LncRNA MAARS, macrophage apoptosis, and atherosclerosisR01HL153356 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI FEINBERG, MARK W · 2020 to 2023
$1.7M
Supplement to RESveratrol To Improve Outcomes in oldeR pEople with PAD (the RESTORE-S Trial)R21AG047510 · NIA · NORTHWESTERN UNIVERSITY AT CHICAGO · PI MCDERMOTT, MARY MCGRAE · 2014 to 2015
$533k
NHLBI NIH HHS R01 HL107510NHLBI NIH HHS R01 HL115141NHLBI NIH HHS R01 HL122846NHLBI NIH HHS R01 HL126117NHLBI NIH HHS R01 HL134849NHLBI NIH HHS R01 HL148207NHLBI NIH HHS R01 HL148355NHLBI NIH HHS R01 HL153356NIA NIH HHS P30 AG028740NIA NIH HHS R21 AG047510
6 · The paper itself

Abstract

Background Peripheral artery disease (PAD) is associated with gastrocnemius muscle abnormalities. However, the biological pathways associated with gastrocnemius muscle dysfunction and their associations with progression of PAD are largely unknown. This study characterized differential gene and microRNA (miRNA) expression in gastrocnemius biopsies from people without PAD compared with those with PAD. Participants with PAD included those with and without PAD progression. Methods and Results mRNA and miRNA sequencing were performed to identify differentially expressed genes, differentially expressed miRNAs, mRNA-miRNA interactions, and associated biological pathways for 3 sets of comparisons: (1) PAD progression (n=7) versus non-PAD (n=7); (2) PAD no progression (n=6) versus non-PAD; and (3) PAD progression versus PAD no progression. Immunohistochemistry was performed to determine gastrocnemius muscle fiber types and muscle fiber size. Differentially expressed genes and differentially expressed miRNAs were more abundant in the comparison of PAD progression versus non-PAD compared with PAD with versus without progression. Among the top significant cellular pathways in subjects with PAD progression were muscle contraction or development, transforming growth factor-beta, growth/differentiation factor, and activin signaling, inflammation, cellular senescence, and notch signaling. Subjects with PAD progression had increased frequency of smaller Type 2a gastrocnemius muscle fibers in exploratory analyses. Conclusions Humans with PAD progression exhibited greater differences in the number of gene and miRNA expression, biological pathways, and Type 2a muscle fiber size compared with those without PAD. Fewer differences were observed between people with PAD without progression and control patients without PAD. Further study is needed to confirm whether the identified transcripts may serve as potential biomarkers for diagnosis and progression of PAD.

Indexed as

MicroRNAsPeripheral Arterial DiseaseHumansMuscle Fibers, SkeletalMuscle, SkeletalRNA, MessengerMicroRNAsRNA, Messengerdifferentially expressed genes (DEG)gastrocnemius muscleperipheral artery disease (PAD)

Identifiers

PMID36300658
PMCPMC9673627
OpenAlexW4307363253

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.