Evidence map›Paper›PMID 36301993›Full record

ArticlePLoS genetics2022

Genome-wide quantification of contributions to sexual fitness identifies genes required for spore viability and health in fission yeast.

R Blake Billmyre, Michael T Eickbush, Caroline J Craig, Jeffrey J Lange, Christopher Wood, Rachel M Helston, Sarah E Zanders

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

  1. Facile generation ofMicrobiology spectrum · 2026
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  4. Review
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  8. Review
  9. Laboratory horror stories: Poison in the agars.bioRxiv : the preprint server for biology · 2024
    Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

R Blake BillmyreStowers Institute for Medical Research, Kansas City, Missouri, United States of America.ORCID 0000-0003-4866-3711
Michael T EickbushStowers Institute for Medical Research, Kansas City, Missouri, United States of America.
Caroline J CraigStowers Institute for Medical Research, Kansas City, Missouri, United States of America.
Jeffrey J LangeStowers Institute for Medical Research, Kansas City, Missouri, United States of America.
Christopher WoodStowers Institute for Medical Research, Kansas City, Missouri, United States of America.
Rachel M HelstonStowers Institute for Medical Research, Kansas City, Missouri, United States of America.
Sarah E ZandersStowers Institute for Medical Research, Kansas City, Missouri, United States of America.ORCID 0000-0003-1867-986X
Stowers Institute for Medical Research · US

Funding

Models of Selfishness: Molecular and Evolutionary Analyses of the Wtf Meiotic DriversDP2GM132936 · NIGMS · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI ZANDERS, SARAH ELIZABETH · 2018 to 2018
$2.5M
Mechanisms of meiotic drive and the functional consequences of rapid genome evolutionR00GM114436 · NIGMS · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI ZANDERS, SARAH ELIZABETH · 2016 to 2018
$747k
Mechanisms of meiotic drive and the functional consequences of rapid genome evolution in SchizosaccharomycesK99GM114436 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ZANDERS, SARAH ELIZABETH · 2015 to 2016
$112k
NIGMS NIH HHS DP2 GM132936NIGMS NIH HHS K99 GM114436NIGMS NIH HHS R00 GM114436
6 · The paper itself

Abstract

Numerous genes required for sexual reproduction remain to be identified even in simple model species like Schizosaccharomyces pombe. To address this, we developed an assay in S. pombe that couples transposon mutagenesis with high-throughput sequencing (TN-seq) to quantitatively measure the fitness contribution of nonessential genes across the genome to sexual reproduction. This approach identified 532 genes that contribute to sex, including more than 200 that were not previously annotated to be involved in the process, of which more than 150 have orthologs in vertebrates. Among our verified hits was an uncharacterized gene, ifs1 (important for sex), that is required for spore viability. In two other hits, plb1 and alg9, we observed a novel mutant phenotype of poor spore health wherein viable spores are produced, but the spores exhibit low fitness and are rapidly outcompeted by wild type. Finally, we fortuitously discovered that a gene previously thought to be essential, sdg1 (social distancing gene), is instead required for growth at low cell densities and can be rescued by conditioned medium. Our assay will be valuable in further studies of sexual reproduction in S. pombe and identifies multiple candidate genes that could contribute to sexual reproduction in other eukaryotes, including humans.

Indexed as

Genes, FungalSchizosaccharomycesSchizosaccharomyces pombe ProteinsHigh-Throughput Nucleotide SequencingSpores, FungalSchizosaccharomyces pombe Proteins

Identifiers

PMID36301993
PMCPMC9668190
OpenAlexW4307412446

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.