Evidence map›Paper›PMID 36312363›Full record

ArticleACS omega2022

Modification at the C2'-O-Position with 2-Methylbenzothiophene Induces Unique Structural Changes and Thermal Transitions on Duplexes of RNA and DNA.

Cheyenne N Phillips, Madeline Choi, Kim Ngan Huynh, Haobin Wang, Marino J E Resendiz

Abstract read
In one paragraph

Article in ACS omega, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Cheyenne N PhillipsDepartment of Chemistry, University of Colorado Denver, Science Building 1151 Arapahoe St, Denver, Colorado 80204, United States.
Madeline ChoiDepartment of Chemistry, University of Colorado Denver, Science Building 1151 Arapahoe St, Denver, Colorado 80204, United States.
Kim Ngan HuynhDepartment of Chemistry, University of Colorado Denver, Science Building 1151 Arapahoe St, Denver, Colorado 80204, United States.
Haobin WangDepartment of Chemistry, University of Colorado Denver, Science Building 1151 Arapahoe St, Denver, Colorado 80204, United States.ORCID https://orcid.org/0000-0002-3532-7770
Marino J E ResendizDepartment of Chemistry, University of Colorado Denver, Science Building 1151 Arapahoe St, Denver, Colorado 80204, United States.ORCID https://orcid.org/0000-0001-5631-2722

Funding

Establishing the impact of 8-Oxo-7,8-dihydroguanosine (8-oxoG) on the structure and function of RNA. Part IIIR15GM132816 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI Marino JE Resendiz, Haobin Wang · 2019 to 2026
$1.4M
NIGMS NIH HHS R15 GM132816
6 · The paper itself

Abstract

Oligonucleotides can be chemically modified for a variety of applications that include their use as biomaterials, in therapeutics, or as tools to understand biochemical processes, among others. This work focuses on the functionalization of oligonucleotides of RNA and DNA (12- or 14-nucleotides long) with methylbenzothiophene (BT), at the C2'-O-position, which led to unique structural features. Circular dichroism (CD) analyses showed that positioning the BT units on one strand led to significant thermal destabilization, while duplexes where each strand contained 4-BT rings formed a distinct arrangement with cooperativity/interactions among the modifications (evidenced from the appearance of a band with positive ellipticity at 235 nm). Interestingly, the structural arrays displayed increased duplex stabilization (>10 °C higher than the canonical analogue) as a function of [Na

Identifiers

PMID36312363
PMCPMC9608412

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.