Evidence map›Paper›PMID 36326697›Full record

ArticleThe Journal of experimental medicine2023

Inherited human ITK deficiency impairs IFN-γ immunity and underlies tuberculosis.

Masato Ogishi, Rui Yang, Rémy Rodriguez, Dominic P Golec, Emmanuel Martin, Quentin Philippot, Jonathan Bohlen, Simon J Pelham, Andrés Augusto Arias, Taushif Khan and 34 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 2 pooled it
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 2 syntheses or guidelines pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Monogenic etiologies of persistent human papillomavirus infections: A comprehensive systematic review.Genetics in medicine : official journal of the American College of Medical Genetics · 2024
    Pooled it
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  11. The monogenic landscape of human infectious diseases.The Journal of allergy and clinical immunology · 2025
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  18. γδ T cells: origin and fate, subsets, diseases and immunotherapy.Signal transduction and targeted therapy · 2023
    Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

44 authors at 14 institutions in 8 countries.

Masato OgishiSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY.ORCID 0000-0003-2421-7389
Rui Yang *St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY.ORCID 0000-0003-4427-2158
Rémy Rodriguez *Laboratory of Lymphocyte Activation and Susceptibility to EBV Infection, INSERM UMR1163, Paris, France.ORCID 0000-0003-3392-6371
Dominic P Golec *Cell Signaling and Immunity Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD.ORCID 0000-0002-2741-3302
Emmanuel MartinLaboratory of Lymphocyte Activation and Susceptibility to EBV Infection, INSERM UMR1163, Paris, France.ORCID 0000-0003-4211-7373
Quentin PhilippotImagine Institute, University of Paris Cité, Paris, France.ORCID 0000-0003-3429-9605
Jonathan BohlenImagine Institute, University of Paris Cité, Paris, France.ORCID 0000-0003-0458-9484
Simon J PelhamSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY.ORCID 0000-0002-3119-662X
Andrés Augusto AriasSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY.ORCID 0000-0002-9478-8403
Taushif KhanDepartment of Immunology, Research Branch, Sidra Medicine, Doha, Qatar.ORCID 0000-0002-7917-8965
Manar AtaDepartment of Immunology, Research Branch, Sidra Medicine, Doha, Qatar.ORCID 0000-0001-7111-5719
Fatima Al AliDepartment of Immunology, Research Branch, Sidra Medicine, Doha, Qatar.ORCID 0000-0001-6451-7357
Flore RozenbergDepartment of Virology, Cochin Hospital, University of Paris, Paris, France.ORCID 0000-0001-7212-2021
Xiao-Fei KongSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY.ORCID 0000-0001-9983-2373
Maya ChrabiehImagine Institute, University of Paris Cité, Paris, France.ORCID 0000-0003-0772-4805
Candice LaineImagine Institute, University of Paris Cité, Paris, France.ORCID 0000-0003-3258-6969
Wei-Te LeiSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY.ORCID 0000-0003-1677-8901
Ji Eun HanSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY.ORCID 0000-0003-1112-9320
Yoann SeeleuthnerImagine Institute, University of Paris Cité, Paris, France.ORCID 0000-0002-1878-8567
Zenia KaulCell Signaling and Immunity Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD.ORCID 0000-0002-3123-8164
Emmanuelle JouanguySt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY.ORCID 0000-0002-7358-9157
Vivien BéziatImagine Institute, University of Paris Cité, Paris, France.ORCID 0000-0002-4020-824X
Leila YoussefianDepartment of Dermatology and Cutaneous Biology, Sidney Kimmel Medical College, Philadelphia, PA.ORCID 0000-0002-4253-6503
Hassan VahidnezhadDepartment of Dermatology and Cutaneous Biology, Sidney Kimmel Medical College, Philadelphia, PA.ORCID 0000-0003-4298-9147
V Koneti RaoLaboratory of Clinical Immunology and Microbiology, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD.ORCID 0000-0002-7881-6902
Bénédicte NevenPediatric Immunology and Hematology Department, Necker Hospital for Sick Children Assistance Publique-Hôpitaux de Paris (AP-HP), Paris, France.ORCID 0000-0001-8941-0935
Claire FieschiClinical Immunology Department, Saint Louis Hospital, AP-HP Université de Paris, Paris, France.ORCID 0000-0003-2136-6178
Davood MansouriClinical Tuberculosis and Epidemiology Research Center, National Research Institute of Tuberculosis and Lung Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran.ORCID 0000-0002-0564-8282
Mohammad ShahrooeiDepartment of Microbiology and Immunology, Laboratory of Clinical Bacteriology and Mycology, KU Leuven, Leuven, Belgium.ORCID 0000-0002-4974-3441
Sevgi PekcanDepartment of Pediatric Pulmonology, Necmettin Erbakan University, Meram Medical Faculty, Konya, Turkey.ORCID 0000-0002-8059-902X
Gulsum AlkanDivision of Pediatric Infectious Diseases, Department of Pediatrics, Selcuk University Faculty of Medicine, Konya, Turkey.ORCID 0000-0003-3384-769X
Melike EmiroğluDivision of Pediatric Infectious Diseases, Department of Pediatrics, Selcuk University Faculty of Medicine, Konya, Turkey.ORCID 0000-0003-1307-0246
Hüseyin TokgözDepartment of Pediatric Hematology, Meram School of Medicine, Necmettin Erbakan University, Konya, Turkey.ORCID 0000-0002-3064-4646
Jouni UittoDepartment of Dermatology and Cutaneous Biology, Sidney Kimmel Medical College, Philadelphia, PA.ORCID 0000-0003-4639-807X
Fabian HauckLaboratory of Lymphocyte Activation and Susceptibility to EBV Infection, INSERM UMR1163, Paris, France.ORCID 0000-0001-9644-2003
Jacinta Bustamante *St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY.ORCID 0000-0002-3439-2482
Laurent Abel *St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY.ORCID 0000-0001-7016-6493
Sevgi Keles *Division of Pediatric Allergy and Immunology, Necmettin Erbakan University, Meram Medical Faculty, Konya, Turkey.ORCID 0000-0001-7344-8947
Nima Parvaneh *Division of Allergy and Clinical Immunology, Department of Pediatrics, Tehran University of Medical Sciences, Tehran, Iran.ORCID 0000-0002-3397-9716
Nico Marr *Department of Immunology, Research Branch, Sidra Medicine, Doha, Qatar.ORCID 0000-0002-1927-7072
Pamela L Schwartzberg *Cell Signaling and Immunity Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD.ORCID 0000-0001-6318-9187
Sylvain Latour *Laboratory of Lymphocyte Activation and Susceptibility to EBV Infection, INSERM UMR1163, Paris, France.ORCID 0000-0001-8238-4391
Jean-Laurent Casanova *St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY.ORCID 0000-0002-7782-4169
Stéphanie Boisson-Dupuis *St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY.ORCID 0000-0002-7115-116X
Inserm · FRRockefeller University · USNational Institutes of Health · USNecmettin Erbakan University · TRThomas Jefferson University · USSelçuk University · TRAssistance Publique – Hôpitaux de Paris · FRHamad bin Khalifa University · QAHoward Hughes Medical Institute · USKU Leuven · BEMasih Daneshvari Hospital · IRTehran University of Medical Sciences · IRUniversidad de Antioquia · COUniversité Paris Cité · FR

Funding

Developing, Demonstrating, and Disseminating Innovative Programs to Achieve Translational SuccessUL1TR001866 · NCATS · ROCKEFELLER UNIVERSITY · PI COLLER, BARRY, KRUEGER, JAMES G · 2016 to 2025
$40.6M
Tissue and organ specific human B cell immunity: Supplement - Metabolic Risk Factors and Inflammation in PASC DevelopmentU19AI142737 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI TECTOR, A JOSEPH · 2019 to 2023
$19.7M
Genetic and Biochemical Approaches to Tyrosine Kinase and Lymphocyte SignalingZIAAI001240 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI SCHWARTZBERG, PAMELA · 2019 to 2025
$18.8M
Pharmacology & ImmunoPathology (PIP) CoreU19AI162568 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI EHRT, SABINE, GLICKMAN, MICHAEL S · 2021 to 2025
$13.0M
Clinical, Immunological and Genetic Analyses of ALPS and Related Immunedysregulatory DisordersZIAAI000732 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI RAO, V KONETI · 2009 to 2025
$10.5M
Genome-Wide Dissection of Mendelian Susceptibility to Mycobacterial DiseaseR01AI095983 · NIAID · ROCKEFELLER UNIVERSITY · PI BUSTAMANTE, JACINTA, CASANOVA, JEAN-LAURENT · 2021 to 2025
$2.5M
A genetic and immunological investigation of JAK-STAT in the pathogenesis of Celiac DiseaseK08DK128631 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI KONG, XIAO-FEI · 2021 to 2025
$827k
Genetic and immunological dissection of coinhibitory crosstalks between human T cells and cancer cellsF99CA274708 · NCI · ROCKEFELLER UNIVERSITY · PI OGISHI, MASATO · 2022 to 2023
$96k
NCATS NIH HHS UL1 TR001866NCI NIH HHS F99 CA274708NIAID NIH HHS R01 AI095983NIAID NIH HHS U19 AI142737NIAID NIH HHS U19 AI162568NIDDK NIH HHS K08 DK128631
6 · The paper itself

Abstract

Inborn errors of IFN-γ immunity can underlie tuberculosis (TB). We report three patients from two kindreds without EBV viremia or disease but with severe TB and inherited complete ITK deficiency, a condition associated with severe EBV disease that renders immunological studies challenging. They have CD4+ αβ T lymphocytopenia with a concomitant expansion of CD4-CD8- double-negative (DN) αβ and Vδ2- γδ T lymphocytes, both displaying a unique CD38+CD45RA+T-bet+EOMES- phenotype. Itk-deficient mice recapitulated an expansion of the γδ T and DN αβ T lymphocyte populations in the thymus and spleen, respectively. Moreover, the patients' T lymphocytes secrete small amounts of IFN-γ in response to TCR crosslinking, mitogens, or forced synapse formation with autologous B lymphocytes. Finally, the patients' total lymphocytes secrete small amounts of IFN-γ, and CD4+, CD8+, DN αβ T, Vδ2+ γδ T, and MAIT cells display impaired IFN-γ production in response to BCG. Inherited ITK deficiency undermines the development and function of various IFN-γ-producing T cell subsets, thereby underlying TB.

Indexed as

Receptors, Antigen, T-Cell, gamma-deltaTuberculosisAnimalsHumansInterferon-gammaMiceProtein-Tyrosine KinasesReceptors, Antigen, T-Cell, alpha-betaThymus GlandT-Lymphocyte Subsetsemt protein-tyrosine kinaseInterferon-gammaProtein-Tyrosine KinasesReceptors, Antigen, T-Cell, alpha-betaReceptors, Antigen, T-Cell, gamma-delta

Identifiers

PMID36326697
PMCPMC9641312
OpenAlexW4308485012

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.