Evidence map›Paper›PMID 36328146›Full record

ArticleBiochimica et biophysica acta. Molecular basis of disease2023

Proteomics reveals antiviral host response and NETosis during acute COVID-19 in high-risk patients.

Alina Bauer, Elisabeth Pachl, Johannes C Hellmuth, Nikolaus Kneidinger, Motaharehsadat Heydarian, Marion Frankenberger, Hans C Stubbe, Bernhard Ryffel, Agnese Petrera, Stefanie M Hauck and 9 more

Open access · hybridAbstract read
In one paragraph

Article in Biochimica et biophysica acta. Molecular basis of disease, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 9 institutions in 2 countries.

Alina BauerHelmholtz Zentrum München, Computational Health Department, Member of the German Center for Lung Research (DZL), 85764 Munich, Germany.
Elisabeth PachlHelmholtz Zentrum München, Computational Health Department, Member of the German Center for Lung Research (DZL), 85764 Munich, Germany; Fraunhofer IKS, Fraunhofer Institute for Cognitive Systems IKS, 80686 Munich, Germany.
Johannes C HellmuthDepartment of Medicine III, University Hospital, LMU Munich, Munich, Germany; German Cancer Consortium (DKTK), Munich, Germany; COVID-19 Registry of the LMU Munich (CORKUM), University Hospital, LMU Munich, Munich, Germany.
Nikolaus KneidingerInstitute of Lung Biology and Disease and Comprehensive Pneumology Center with the CPC-M bioArchive, Helmholtz Zentrum Muenchen, Member of the German Center for Lung Research (DZL), Munich, Germany; Department of Medicine V, University Hospital, LMU Munich, Member of the German Center for Lung Research (DZL), Munich, Germany.
Motaharehsadat HeydarianCOVID-19 Registry of the LMU Munich (CORKUM), University Hospital, LMU Munich, Munich, Germany.
Marion FrankenbergerCOVID-19 Registry of the LMU Munich (CORKUM), University Hospital, LMU Munich, Munich, Germany.
Hans C StubbeCOVID-19 Registry of the LMU Munich (CORKUM), University Hospital, LMU Munich, Munich, Germany; Department of Medicine II, University Hospital, LMU Munich, Munich, Germany.
Bernhard RyffelLaboratory of Experimental and Molecular Immunology and Neurogenetics (INEM), UMR 7355 CNRS-University of Orleans and Artimmune, Orléans, France.
Agnese PetreraMetabolomics and Proteomics Core, Helmholtz Zentrum München, Munich, Germany.
Stefanie M HauckMetabolomics and Proteomics Core, Helmholtz Zentrum München, Munich, Germany.
Jürgen BehrInstitute of Lung Biology and Disease and Comprehensive Pneumology Center with the CPC-M bioArchive, Helmholtz Zentrum Muenchen, Member of the German Center for Lung Research (DZL), Munich, Germany; Department of Medicine V, University Hospital, LMU Munich, Member of the German Center for Lung Research (DZL), Munich, Germany.
Rainer KaiserCOVID-19 Registry of the LMU Munich (CORKUM), University Hospital, LMU Munich, Munich, Germany; Medizinische Klinik und Poliklinik I, University Hospital, LMU Munich, Munich, Germany; DZHK (German Center for Cardiovascular Research), Partner Site Munich Heart Alliance, Munich, Germany.
Clemens SchererCOVID-19 Registry of the LMU Munich (CORKUM), University Hospital, LMU Munich, Munich, Germany; Medizinische Klinik und Poliklinik I, University Hospital, LMU Munich, Munich, Germany; DZHK (German Center for Cardiovascular Research), Partner Site Munich Heart Alliance, Munich, Germany.
Li DengHelmholtz Zentrum München, Computational Health Department, Member of the German Center for Lung Research (DZL), 85764 Munich, Germany; Institute of Virology, Technical University of Munich, 81675 Munich, Germany.
Daniel TeupserInstitute of Laboratory Medicine, University Hospital, LMU Munich, Munich, Germany.
Narges AhmidiFraunhofer IKS, Fraunhofer Institute for Cognitive Systems IKS, 80686 Munich, Germany.
Maximilian MuenchhoffCOVID-19 Registry of the LMU Munich (CORKUM), University Hospital, LMU Munich, Munich, Germany; Max von Pettenkofer Institute and Gene Center, Virology, National Reference Center for Retroviruses, LMU München, Munich, Germany; German Center for Infection Research (DZIF), Partner Site Munich, Munich, Germany.
Benjamin SchubertHelmholtz Zentrum München, Computational Health Department, Member of the German Center for Lung Research (DZL), 85764 Munich, Germany; Department of Mathematics, Technical University of Munich, 85748 Garching bei München, Germany.
Anne HilgendorffInstitute of Lung Biology and Disease and Comprehensive Pneumology Center with the CPC-M bioArchive, Helmholtz Zentrum Muenchen, Member of the German Center for Lung Research (DZL), Munich, Germany; Center for Comprehensive Developmental Care (CDeC(LMU)) at the Interdisciplinary Social Pediatric Center (iSPZ), LMU Hospital, Munich, Germany. Electronic address: anne.hilgendorff@med.uni-muenchen.de.
LMU Klinikum · DELudwig-Maximilians-Universität München · DEFraunhofer Institute for Cognitive Systems · DEGerman Center for Lung Research · DEHelmholtz Zentrum München · DETechnical University of Munich · DECentre National de la Recherche Scientifique · FRGerman Center for Infection Research · DEGerman Centre for Cardiovascular Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SARS-CoV-2 remains an acute threat to human health, endangering hospital capacities worldwide. Previous studies have aimed at informing pathophysiologic understanding and identification of disease indicators for risk assessment, monitoring, and therapeutic guidance. While findings start to emerge in the general population, observations in high-risk patients with complex pre-existing conditions are limited. We addressed the gap of existing knowledge with regard to a differentiated understanding of disease dynamics in SARS-CoV-2 infection while specifically considering disease stage and severity. We biomedically characterized quantitative proteomics in a hospitalized cohort of COVID-19 patients with mild to severe symptoms suffering from different (co)-morbidities in comparison to both healthy individuals and patients with non-COVID related inflammation. Deep clinical phenotyping enabled the identification of individual disease trajectories in COVID-19 patients. By the use of the individualized disease phase assignment, proteome analysis revealed a severity dependent general type-2-centered host response side-by-side with a disease specific antiviral immune reaction in early disease. The identification of phenomena such as neutrophil extracellular trap (NET) formation and a pro-coagulatory response characterizing severe disease was successfully validated in a second cohort. Together with the regulation of proteins related to SARS-CoV-2-specific symptoms identified by proteome screening, we not only confirmed results from previous studies but provide novel information for biomarker and therapy development.

Indexed as

COVID-19Antiviral AgentsHumansProteomeProteomicsSARS-CoV-2Antiviral AgentsProteomeBiomarkerCOVID-19High-risk patientsImmune responseNETosisProteomics

Identifiers

PMID36328146
PMCPMC9622026
OpenAlexW4307908231

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.