Evidence map›Paper›PMID 36332723›Full record

ArticleVirus research2023

Diversity and molecular epidemiology of Ostreid herpesvirus 1 in farmed Crassostrea gigas in Australia: Geographic clusters and implications for "microvariants" in global mortality events.

Suzanne Trancart, Alison Tweedie, Olivia Liu, Ika Paul-Pont, Paul Hick, Maryline Houssin, Richard J Whittington

Open access · hybridAbstract read
In one paragraph

Article in Virus research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Suzanne TrancartLABÉO Research Department, 1 Route de Rosel, Cedex 4, Caen 14053, France.
Alison TweedieThe University of Sydney, Sydney School of Veterinary Science, Faculty of Science, 425 Werombi Rd, Camden, NSW 2570, Australia; Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, NSW 2568, Australia.
Olivia LiuThe University of Sydney, Sydney School of Veterinary Science, Faculty of Science, 425 Werombi Rd, Camden, NSW 2570, Australia; Department of Agriculture, Water and the Environment, Canberra, ACT 2601, Australia.
Ika Paul-PontThe University of Sydney, Sydney School of Veterinary Science, Faculty of Science, 425 Werombi Rd, Camden, NSW 2570, Australia; LEMAR, Rue Dumont d'Urville, Plouzané 29280, France.
Paul HickThe University of Sydney, Sydney School of Veterinary Science, Faculty of Science, 425 Werombi Rd, Camden, NSW 2570, Australia; Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, NSW 2568, Australia.
Maryline HoussinLABÉO Research Department, 1 Route de Rosel, Cedex 4, Caen 14053, France; UMR BOREA Université de Caen Normandie, MNHN, CNRS 8067, SU, IRD 207, UCN, UA, Esplanade de la Paix Caen Cedex 4 14032, France.
Richard J WhittingtonThe University of Sydney, Sydney School of Veterinary Science, Faculty of Science, 425 Werombi Rd, Camden, NSW 2570, Australia. Electronic address: richard.whittington@sydney.edu.au.
The University of Sydney · AUCentre National de la Recherche Scientifique · FRMétéo-France · FRUniversity of Technology Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since 2010, mass mortality events known as Pacific oyster mortality syndrome (POMS) have occurred in Crassostrea gigas in Australia associated with Ostreid herpesvirus 1. The virus was thought to be an OsHV-1 µVar or "microvariant", i.e. one of the dominant variants associated with POMS in Europe, but there are few data to characterize the genotype in Australia. Consequently, the genetic identity and diversity of the virus was determined to understand the epidemiology of the disease in Australia. Samples were analysed from diseased C. gigas over five summer seasons between 2011 and 2016 in POMS-affected estuaries: Georges River in New South Wales (NSW), Hawkesbury River (NSW) and Pitt Water in Tasmania. Sequencing was attempted for six genomic regions. Numerous variants were identified among these regions (n = 100 isolates) while twelve variants were identified from concatenated nucleotide sequences (n = 61 isolates). Nucleotide diversity of the seven genotypes of C region among Australian isolates (Pi 0.99 × 10

Indexed as

AustraliaCrassostrea gigasDiversityOstreid herpesvirusPhylogenyPolymorphismVariant

Identifiers

PMID36332723
PMCPMC10194400
OpenAlexW4308029176

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.