Evidence map›Paper›PMID 36355422›Full record

ArticleHuman molecular genetics2023

Syntaxin 4 is essential for hearing in human and zebrafish.

Isabelle Schrauwen, Amama Ghaffar, Thashi Bharadwaj, Khadim Shah, Sakina Rehman, Anushree Acharya, Khurram Liaqat, Nicole S Lin, Jenna L Everard, Anwar Khan and 4 more

Open access · greenAbstract read
In one paragraph

Article in Human molecular genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Review
  3. Frontiers in pharmacology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Isabelle SchrauwenCenter for Statistical Genetics, Sergievsky Center, and the Department of Neurology, Columbia University Medical Center, New York, NY, USA.
Amama GhaffarDepartment of Otorhinolaryngology - Head & Neck Surgery, School of Medicine University of Maryland, Baltimore, MD, USA.
Thashi BharadwajCenter for Statistical Genetics, Sergievsky Center, and the Department of Neurology, Columbia University Medical Center, New York, NY, USA.ORCID 0000-0002-7870-5655
Khadim ShahDepartment of Biotechnology, COMSATS University Islamabad, Abbottabad Campus, Khyber Pakhtunkhwa, Pakistan.
Sakina RehmanDepartment of Otorhinolaryngology - Head & Neck Surgery, School of Medicine University of Maryland, Baltimore, MD, USA.
Anushree AcharyaCenter for Statistical Genetics, Sergievsky Center, and the Department of Neurology, Columbia University Medical Center, New York, NY, USA.
Khurram LiaqatCenter for Statistical Genetics, Sergievsky Center, and the Department of Neurology, Columbia University Medical Center, New York, NY, USA.ORCID 0000-0002-0792-5773
Nicole S LinCenter for Statistical Genetics, Sergievsky Center, and the Department of Neurology, Columbia University Medical Center, New York, NY, USA.
Jenna L EverardCenter for Statistical Genetics, Sergievsky Center, and the Department of Neurology, Columbia University Medical Center, New York, NY, USA.
Anwar KhanDepartment of Biochemistry, Hazara University Mansehra, Khyber Pakhtunkhwa, Pakistan.
Zubair M AhmedDepartment of Otorhinolaryngology - Head & Neck Surgery, School of Medicine University of Maryland, Baltimore, MD, USA.
Wasim AhmadDepartment of Biochemistry, Faculty of Biological Sciences, Quaid-i-Azam University Islamabad, Islamabad, Pakistan.
Saima RiazuddinDepartment of Otorhinolaryngology - Head & Neck Surgery, School of Medicine University of Maryland, Baltimore, MD, USA.
Suzanne M LealCenter for Statistical Genetics, Sergievsky Center, and the Department of Neurology, Columbia University Medical Center, New York, NY, USA.ORCID 0000-0003-1231-8174
Columbia University Irving Medical Center · USUniversity of Maryland, Baltimore · USCOMSATS University Islamabad · PKHazara University · PKQuaid-i-Azam University · PK

Funding

Identification of Nonsyndromic Hearing Impairment GenesR01DC003594 · NIDCD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SUZANNE M LEAL · 2004 to 2026
$7.7M
Genetics and Functional Studies of Autosomal Recessive Neurological DisordersR01NS107428 · NINDS · UNIVERSITY OF MARYLAND BALTIMORE · PI Saima Riazuddin · 2018 to 2026
$4.7M
Localization of Nonsyndromic Hearing Impairment GenesR01DC011651 · NIDCD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LEAL, SUZANNE M · 2011 to 2020
$2.9M
Unraveling the genetic architecture of cochleovestibular malformationsR01DC019908 · NIDCD · UNIVERSITY OF ARIZONA · PI Isabelle Veerle Suzanne Schrauwen · 2022 to 2026
$2.0M
NIDCD NIH HHS R01 DC003594NIDCD NIH HHS R01 DC011651NIDCD NIH HHS R01 DC019908NINDS NIH HHS R01 NS107428
6 · The paper itself

Abstract

Congenital hearing impairment (HI) is a genetically highly heterogeneous disorder in which prompt recognition and intervention are crucial to optimize outcomes. In this study, we used exome sequencing to investigate a large consanguineous Pakistani family with eight affected individuals showing bilateral severe-to-profound HI. This identified a homozygous splice region variant in STX4 (c.232 + 6T>C), which causes exon skipping and a frameshift, that segregated with HI (two-point logarithm of odds (LOD) score = 5.9). STX4, a member of the syntaxin family, is a component of the SNARE machinery involved in several vesicle transport and recycling pathways. In silico analysis showed that murine orthologue Stx4a is highly and widespread expressed in the developing and adult inner ear. Immunofluorescent imaging revealed localization of STX4A in the cell body, cell membrane and stereocilia of inner and outer hair cells. Furthermore, a morpholino-based knockdown of stx4 in zebrafish showed an abnormal startle response, morphological and developmental defects, and a disrupted mechanotransduction function in neuromast hair cells measured via FM1-43 uptake. Our findings indicate that STX4 dysfunction leads to HI in humans and zebrafish and supports the evolutionary conserved role of STX4 in inner ear development and hair cell functioning.

Indexed as

Mechanotransduction, CellularZebrafishAdultAnimalsHair Cells, Auditory, OuterHearingHumansMiceQa-SNARE ProteinsQa-SNARE Proteins

Identifiers

PMID36355422
PMCPMC10026253
OpenAlexW4308685711

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.