Evidence map›Paper›PMID 36357546›Full record

ArticleScientific reports2022

A new catalytic site functioning in antigen cleavage by H34 catalytic antibody light chain.

Emi Hifumi, Tamami Nonaka, Hiroaki Taguchi, Taizo Uda

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Emi HifumiInstitute for Research Management, Oita University, 700 Dannoharu, Oita-Shi, Oita, 870-1192, Japan. e-hifumi@oita-u.ac.jp.
Tamami NonakaInstitute for Research Management, Oita University, 700 Dannoharu, Oita-Shi, Oita, 870-1192, Japan.
Hiroaki TaguchiFaculty of Pharmaceutical Sciences, Suzuka University of Medical Science, 3500-3 Minamitamagaki-Cho, Suzuka, 510-0293, Japan.
Taizo UdaInstitute for Research Management, Oita University, 700 Dannoharu, Oita-Shi, Oita, 870-1192, Japan.
Oita University · JPSuzuka University of Medical Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cleavage reactions of catalytic antibodies are mediated by a serine protease mechanism involving a catalytic triad composed of His, Ser, and Asp residues, which reside in the variable region. Recently, we discovered a catalytic antibody, H34 wild type (H34wt), that is capable of enzymatically cleaving an immune-check point PD-1 peptide and recombinant PD-1; however, H34wt does not contain His residues in the variable region. To clarify the reason behind the catalytic features of H34wt and the amino acid residues involved in the catalytic reaction, we performed site-directed mutagenesis focusing on the amino acid residues involved in the cleavage reaction, followed by catalytic activity tests, immunological reactivity evaluation, and molecular modeling. The results revealed that the cleavage reaction by H34wt proceeds through the action of a new catalytic site composed of Arg, Thr, and Gln. This new scheme differs from that of the serine protease mechanism of catalytic antibodies.

Indexed as

Antibodies, CatalyticAmino AcidsAmino Acid SequenceCatalytic DomainImmunoglobulin Light ChainsProgrammed Cell Death 1 ReceptorSerine EndopeptidasesAmino AcidsAntibodies, CatalyticImmunoglobulin Light ChainsProgrammed Cell Death 1 ReceptorSerine Endopeptidases

Identifiers

PMID36357546
PMCPMC9649737
OpenAlexW4308711098

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.