Evidence map›Paper›PMID 36365024›Full record

ArticlePathogens (Basel, Switzerland)2022

Identification of Novel Genes and Proteoforms in

Esdras Matheus Gomes da Silva, Karina Mastropasqua Rebello, Young-Jun Choi, Vitor Gregorio, Alexandre Rossi Paschoal, Makedonka Mitreva, James H McKerrow, Ana Gisele da Costa Neves-Ferreira, Fabio Passetti

Open access · goldAbstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Insights into the genetic diversity ofFood and waterborne parasitology · 2024
    Review
  2. Article
  3. SpliceProt 2.0: A Sequence Repository of Human, Mouse, and Rat Proteoforms.International journal of molecular sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Esdras Matheus Gomes da SilvaInstituto Carlos Chagas, Fiocruz, Curitiba 81350-010, PR, Brazil.ORCID 0000-0001-9084-938X
Karina Mastropasqua RebelloLaboratory of Toxinology, Oswaldo Cruz Institute, Fiocruz, Rio de Janeiro 21040-900, RJ, Brazil.ORCID 0000-0001-9495-8399
Young-Jun ChoiDepartment of Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA.
Vitor GregorioBioinformatics and Pattern Recognition Group (Bioinfo-CP), Department of Computer Science (DACOM), Federal University of Technology-Parana (UTFPR), Cornélio Procópio 86300-000, PR, Brazil.
Alexandre Rossi PaschoalBioinformatics and Pattern Recognition Group (Bioinfo-CP), Department of Computer Science (DACOM), Federal University of Technology-Parana (UTFPR), Cornélio Procópio 86300-000, PR, Brazil.ORCID 0000-0002-8887-0582
Makedonka MitrevaDepartment of Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA.ORCID 0000-0001-9572-3436
James H McKerrowCenter for Discovery and Innovation in Parasitic Diseases, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, CA 92093, USA.
Ana Gisele da Costa Neves-FerreiraLaboratory of Toxinology, Oswaldo Cruz Institute, Fiocruz, Rio de Janeiro 21040-900, RJ, Brazil.ORCID 0000-0002-7863-9512
Fabio PassettiInstituto Carlos Chagas, Fiocruz, Curitiba 81350-010, PR, Brazil.ORCID 0000-0001-5672-7848
Fundação Carlos Chagas · BRFundação Oswaldo Cruz · BRUniversidade Tecnológica Federal do Paraná · BRWashington University in St. Louis · USUniversity of California San Diego · US

Funding

Coordenação de Aperfeicoamento de Pessoal de Nível Superior Finance Code 001Fundação Araucária PDI 66/2021Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro E-26/202.658/2018National Council for Scientific and Technological Development 301707/2017-0National Council for Scientific and Technological Development 308697/2019-7National Council for Scientific and Technological Development 436459/2018-3National Council for Scientific and Technological Development 442421/2019-2
6 · The paper itself

Abstract

RNA sequencing (RNA-Seq) and mass-spectrometry-based proteomics data are often integrated in proteogenomic studies to assist in the prediction of eukaryote genome features, such as genes, splicing, single-nucleotide (SNVs), and single-amino-acid variants (SAAVs). Most genomes of parasite nematodes are draft versions that lack transcript- and protein-level information and whose gene annotations rely only on computational predictions.

Indexed as

genome annotationmass spectrometryncRNAsnematodeRNA-Seq

Identifiers

PMID36365024
PMCPMC9694666
OpenAlexW4308126811

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.