Evidence map›Paper›PMID 36368157›Full record

ArticleBiochemical and biophysical research communications2022

The differentially expressed gene signatures of the Cullin 3-RING ubiquitin ligases in neuroendocrine cancer.

Jong-Uk Park, Dong-Kyu Kim, Ji-Ye Kim, Jae-Hyun Jo, Yeong-Mu Kim, Dong-Hyun Jung, Hye-Ji Kim, Seon-Mi Ok, Hyo Je Cho, Sangjune Kim and 3 more

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Jong-Uk ParkDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Dong-Kyu KimDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Ji-Ye KimDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Jae-Hyun JoDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Yeong-Mu KimDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Dong-Hyun JungDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Hye-Ji KimDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Seon-Mi OkDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Hyo Je ChoDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Sangjune KimDepartment of Biological Sciences and Biotechnology, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Christophe E RedonDevelopmental Therapeutics Branch, Center for Cancer Research, NCI, NIH, Bethesda, MD, 20892-4255, USA.
Mirit I AladjemDevelopmental Therapeutics Branch, Center for Cancer Research, NCI, NIH, Bethesda, MD, 20892-4255, USA.
Sang-Min JangDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea. Electronic address: smjang@cbnu.ac.kr.
Chungbuk National University · KRCenter for Cancer Research · US

Funding

Intramural NIH HHS Z99 CA999999
6 · The paper itself

Abstract

Cullin-RING ubiquitin E3 ligase (CRLs) composed of four components including cullin scaffolds, adaptors, substrate receptors, and RING proteins mediates the ubiquitination of approximately 20% of cellular proteins that are involved in numerous biological processes. While CRLs deregulation contributes to the pathogenesis of many diseases, including cancer, how CRLs deregulation occurs is yet to be fully investigated. Here, we demonstrate that components of CRL3 and its transcriptional regulators are possible prognosis marker of neuroendocrine (NE) cancer. Analysis of Cancer Cell Line Encyclopedia (CCLE) through the CellMinerCDB portal revealed that expression of CRL3 scaffold Cullin 3 (CUL3) highly correlates with NE signature, and CUL3 silencing inhibited NE cancer proliferation. Moreover, subset of 151 BTB (Bric-a-brac, Tramtrack, Broad complex) domain-containing proteins that have dual roles as substrate receptors and adaptor subunits in CRL3, as well as the expression of transcription factors (TFs) that control the transcription of BTB genes were upregulated in NE cancer. Analysis using published ChIP-sequencing data in small cell lung cancer (SCLC), including NE or non-NE SCLC verified that gene promoter of candidates which show high correlation with NE signature enriched H3K27Ac. These observations suggest that CRL3 is a master regulator of NE cancer and knowledge of specifically regulated CRL3 genes in NE cancer may accelerate new therapeutic approaches.

Indexed as

Carcinoma, NeuroendocrineCullin ProteinsUbiquitin-Protein LigasesCarrier ProteinsHumansTranscription FactorsUbiquitinUbiquitinationCarrier ProteinsCUL3 protein, humanCullin ProteinsTranscription FactorsUbiquitinUbiquitin-Protein LigasesBTB genesCRL3Neuroendocrine cancerTranscription factors

Identifiers

PMID36368157
PMCPMC9671844
OpenAlexW4308570690

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.