Evidence map›Paper›PMID 36369338›Full record

ArticleScientific reports2022

Functional and molecular dissection of HCMV long non-coding RNAs.

Sungwon Lee, Hyewon Kim, Ari Hong, Jaewon Song, Sungyul Lee, Myeonghwan Kim, Sung-Yeon Hwang, Dongjoon Jeong, Jeesoo Kim, Ahyeon Son and 5 more

Abstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Extended poly(A) tails are a shared feature of herpesvirus mRNAs.bioRxiv : the preprint server for biology · 2025
    Article
  3. Article
  4. Review
  5. Article
  6. De novo assembly of RNA mCell reports · 2025
    Article
  7. Article
  8. N6-methyladenosine modification of HCMV IE1 transcript promotes the repressive state of viral genome to achieve latent infection.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. The role of NJournal of virology · 2025
    Review
  10. Article
  11. Transcriptional Profiling of Filovirus-Infected Nonhuman Primate Samples.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  12. Review
  13. Review
  14. Review
  15. Review
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  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Sungwon Lee *School of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Hyewon Kim *School of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Ari Hong *Institute for Basic Science, Center for RNA Research, Seoul, 08826, Republic of Korea.
Jaewon Song *School of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Sungyul LeeSchool of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Myeonghwan KimSchool of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Sung-Yeon HwangSchool of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Dongjoon JeongSchool of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Jeesoo KimSchool of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Ahyeon SonSchool of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Young-Suk LeeDepartment of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea.
V Narry KimSchool of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Jong-Seo KimSchool of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Hyeshik ChangSchool of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea. hyeshik@snu.ac.kr.
Kwangseog AhnSchool of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea. ksahn@snu.ac.kr.

Funding

Institute for Basic Science IBS-R008-D1Ministry of Education, Science and Technology 2021R1C1C1010758Ministry of Education, Science, and Technology of Korea 2019R1A6A1A10073437Ministry of Science and ICT, South Korea NRF-2020R1A2C3011298
6 · The paper itself

Abstract

Small, compact genomes confer a selective advantage to viruses, yet human cytomegalovirus (HCMV) expresses the long non-coding RNAs (lncRNAs); RNA1.2, RNA2.7, RNA4.9, and RNA5.0. Little is known about the function of these lncRNAs in the virus life cycle. Here, we dissected the functional and molecular landscape of HCMV lncRNAs. We found that HCMV lncRNAs occupy ~ 30% and 50-60% of total and poly(A)+viral transcriptome, respectively, throughout virus life cycle. RNA1.2, RNA2.7, and RNA4.9, the three abundantly expressed lncRNAs, appear to be essential in all infection states. Among these three lncRNAs, depletion of RNA2.7 and RNA4.9 results in the greatest defect in maintaining latent reservoir and promoting lytic replication, respectively. Moreover, we delineated the global post-transcriptional nature of HCMV lncRNAs by nanopore direct RNA sequencing and interactome analysis. We revealed that the lncRNAs are modified with N

Indexed as

Cytomegalovirus InfectionsRNA, Long NoncodingCells, CulturedCytomegalovirusHumansTranscriptomeVirus ReplicationRNA, Long Noncoding

Identifiers

PMID36369338
PMCPMC9652368

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.