Evidence map›Paper›PMID 36377944›Full record

ArticleMicrobiology spectrum2022

Prevalence and Characteristics of Canine Parvovirus Type 2 in Henan Province, China.

Pengfei Fu, Dongchang He, Xuan Cheng, Xinrui Niu, Congrong Wang, Yiqian Fu, Kun Li, Heshui Zhu, Weifei Lu, Jiang Wang and 1 more

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Pengfei Fu *College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan Province, China.
Dongchang He *Animal Infectious Disease Laboratory, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Xuan Cheng *College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan Province, China.
Xinrui NiuCollege of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan Province, China.
Congrong WangCollege of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan Province, China.
Yiqian FuCollege of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan Province, China.
Kun LiState Key Laboratory of Veterinary Etiological Biology, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, China.
Heshui ZhuCollege of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan Province, China.
Weifei LuCollege of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan Province, China.
Jiang WangCollege of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan Province, China.
Beibei ChuCollege of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan Province, China.ORCID 0000-0003-2961-4754
Henan Institute of Education · CNLanzhou Veterinary Research Institute · CNYangzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To investigate the epidemic profile and genetic diversity of canine parvovirus type 2 (CPV-2), a total of 111 clinical samples collected from dogs suspected of CPV-2 infection in 10 cities of Henan province of China during 2020 to 2021 were screened by PCR. The results showed a CPV-2-positive rate of 88.29% (98/111). Nearly full-length genomes of 98 CPV-2 strains were sequenced and analyzed. CPV-2c strains (91.84%, 90/98) were significantly higher than that of new CPV-2a strains (8.16%, 8/98) in Henan province without detecting other CPV genotypes, indicating that CPV-2c has become the dominant genotype in Henan province. A phylogenetic analysis of NS1 and VP2 amino acids grouped the strains in this study with Asian strains, which clustered into an identical branch. Based on the CPV-2 VP2 sequences in this study and available in the NCBI database, the adaptation analyses showed that 17 positive selection sites and 10 parallel evolution sites were identified in the VP2 protein of CPV-2, of which three sites (sites 5, 370, and 426) were both under positive selection pressure and parallel evolution. Interestingly, two amino acid mutations (A5G and Q370R) were also observed in the VP2 proteins of 82 CPV-2c strains in this study, which differed from the earlier CPV-2c strain (GU380303) in China. In addition, a unique mutation (I447M) was observed in the VP2 protein of five CPV-2c strains, which was first reported in China. This study provides powerful insight to further our understanding of the epidemic status and evolution of CPV-2 in China.

Indexed as

Dog DiseasesParvoviridae InfectionsParvovirus, CanineAnimalsDogsMutationPhylogenyPolymerase Chain ReactionPrevalencecanine parvovirusepidemiologyNS1phylogenetic analysisvirus evolutionVP2

Identifiers

PMID36377944
PMCPMC9769957
OpenAlexW4309095924

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.