Evidence map›Paper›PMID 36428603›Full record

ArticleCancers2022

Transcriptomic and Proteomic Profiles for Elucidating Cisplatin Resistance in Head-and-Neck Squamous Cell Carcinoma.

Yoelsis Garcia-Mayea, Lisandra Benítez-Álvarez, Almudena Sánchez-García, Marina Bataller, Osmel Companioni, Cristina Mir, Sergi Benavente, Juan Lorente, Nuria Canela, Ceres Fernández-Rozadilla and 2 more

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Yoelsis Garcia-MayeaBiomedical Research in Cancer Stem Cells Group, Vall d'Hebron Research Institute (VHIR), 08035 Barcelona, Spain.ORCID 0000-0002-9395-7471
Lisandra Benítez-ÁlvarezDepartament de Genètica, Microbiologia i Estadística, Universitat de Barcelona, 08028 Barcelona, Spain.
Almudena Sánchez-GarcíaBiomedical Research in Cancer Stem Cells Group, Vall d'Hebron Research Institute (VHIR), 08035 Barcelona, Spain.
Marina BatallerBiomedical Research in Cancer Stem Cells Group, Vall d'Hebron Research Institute (VHIR), 08035 Barcelona, Spain.
Osmel CompanioniDepartment of Biochemistry, Massey Cancer Center, Virginia Commonwealth University, Richmond, VA 23298, USA.
Cristina MirBiomedical Research in Cancer Stem Cells Group, Vall d'Hebron Research Institute (VHIR), 08035 Barcelona, Spain.ORCID 0000-0003-3137-6521
Sergi BenaventeBiomedical Research in Cancer Stem Cells Group, Vall d'Hebron Research Institute (VHIR), 08035 Barcelona, Spain.ORCID 0000-0002-2700-3522
Juan LorenteBiomedical Research in Cancer Stem Cells Group, Vall d'Hebron Research Institute (VHIR), 08035 Barcelona, Spain.
Nuria CanelaEurecat Centre Tecnològic de Catalunya-Centre for Omic Sciences (COS), Joint Unit University of Rovira i Virgili-EURECAT, 43204 Reus, Spain.ORCID 0000-0003-0261-2396
Ceres Fernández-RozadillaInstituto de Investigación Sanitaria de Santiago de Compostela (IDIS), 15706 Santiago de Compostela, Spain.ORCID 0000-0001-7330-4804
Angel CarracedoFundación de Medicina Xenómica (SERGAS), 15706 Santiago de Compostela, Spain.ORCID 0000-0003-1085-8986
Matilde E LLeonartBiomedical Research in Cancer Stem Cells Group, Vall d'Hebron Research Institute (VHIR), 08035 Barcelona, Spain.ORCID 0000-0002-6196-7405
Vall d'Hebron Institut de Recerca · ESCentre for Omic Sciences · ESInstituto de Investigación Sanitaria de Santiago · ESUniversidade de Santiago de Compostela · ESUniversitat de Barcelona · ESVirginia Commonwealth University · US

Funding

Asociación Española Contra el Cáncer Ref. GC16173720CARRInstituto de Salud Carlos III PI20/00556
6 · The paper itself

Abstract

To identify the novel genes involved in chemoresistance in head and neck squamous cell carcinoma (HNSCC), we explored the expression profiles of the following cisplatin (CDDP) resistant (R) versus parental (sensitive) cell lines by RNA-sequencing (RNA-seq): JHU029, HTB-43 and CCL-138. Using the parental condition as a control, 30 upregulated and 85 downregulated genes were identified for JHU029-R cells; 263 upregulated and 392 downregulated genes for HTB-43-R cells, and 154 upregulated and 68 downregulated genes for CCL-138-R cells. Moreover, we crossed-checked the RNA-seq results with the proteomic profiles of HTB-43-R (versus HTB-43) and CCL-138-R (versus CCL-138) cell lines. For the HTB-43-R cells, 21 upregulated and 72 downregulated targets overlapped between the proteomic and transcriptomic data; whereas in CCL-138-R cells, four upregulated and three downregulated targets matched. Following an extensive literature search, six genes from the RNA-seq (

Indexed as

cancerchemotherapy resistancecisplatinHNSCCproteomicsRNA-seq

Identifiers

PMID36428603
PMCPMC9688094
OpenAlexW4308712274

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.