Evidence map›Paper›PMID 36430738›Full record

ArticleInternational journal of molecular sciences2022

A Transcriptome and Methylome Study Comparing Tissues of Early and Late Onset Colorectal Carcinoma.

Muhammad G Kibriya, Maruf Raza, Anthony Quinn, Mohammed Kamal, Habibul Ahsan, Farzana Jasmine

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 9 citations in OpenAlex.

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  7. Association ofInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Muhammad G KibriyaInstitute for Population and Precision Health (IPPH), Biological Sciences Division, The University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0001-9784-6958
Maruf RazaDepartment of Pathology, Jahurul Islam Medical College, Kishoregonj 2336, Bangladesh.ORCID 0000-0003-0251-4518
Anthony QuinnInstitute for Population and Precision Health (IPPH), Biological Sciences Division, The University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0003-3668-4566
Mohammed KamalDepartment of Pathology, The Laboratory Dhaka, Dhaka 1205, Bangladesh.
Habibul AhsanInstitute for Population and Precision Health (IPPH), Biological Sciences Division, The University of Chicago, Chicago, IL 60637, USA.
Farzana JasmineInstitute for Population and Precision Health (IPPH), Biological Sciences Division, The University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0002-5980-1174
Chicago Department of Public Health · USUniversity of Dhaka · BD

Funding

Pilot Program CoreP30ES027792 · NIEHS · UNIVERSITY OF CHICAGO · PI RICHARD D MINSHALL · 2017 to 2026
$13.6M
Bangladesh Center of Research Excellence in Non-communicable Disease- Planning UnitP20CA210305 · NCI · UNIVERSITY OF CHICAGO · PI AHSAN, HABIBUL · 2016 to 2017
$524k
NCI NIH HHS P20 CA210305NIEHS NIH HHS P30 ES027792NIH HHS P20CA210305NIH HHS P30ES027792
6 · The paper itself

Abstract

There is an increase in the incidence of early onset colorectal carcinoma (EOCRC). To better understand if there is any difference in molecular pathogenesis of EOCRC and late onset colorectal carcinoma (LOCRC), we compared the clinical, histological, transcriptome, and methylome profile of paired CRC and healthy colonic tissue from 67 EOCRC and 98 LOCRC patients. The frequency of stage 3 CRC, lymph node involvement, lymphovascular invasion, and perineural invasion was higher in the EOCRC group. Many of the cancer related pathways were differentially expressed in CRC tissue in both EOCRC and LOCRC patients. However, the magnitude of differential expression for some groups of genes, such as DNA damage repair genes and replication stress genes, were significantly less pronounced in the EOCRC group, suggesting less efficient DNA damage repair to be associated with EOCRC. A more marked methylation of "growth factor receptor" genes in LOCRC correlated with a more pronounced down-regulation of those genes in that group. From a therapeutic point of view, more over-expression of fatty acid synthase (

Indexed as

Colorectal NeoplasmsEpigenomeHumansIncidenceTranscriptomebase excision repaircolorectal carcinomaCTLA4DNA damage repairDNA replication repairearly onset CRCFASNHAVCR2lymphovascular invasionMMRmulti-omicsperineural invasion

Identifiers

PMID36430738
PMCPMC9697435
OpenAlexW4309686985

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.