Evidence map›Paper›PMID 36445327›Full record

ArticleeLife2022

Cellular reprogramming with ATOH1, GFI1, and POU4F3 implicate epigenetic changes and cell-cell signaling as obstacles to hair cell regeneration in mature mammals.

Amrita A Iyer, Ishwar Hosamani, John D Nguyen, Tiantian Cai, Sunita Singh, Melissa M McGovern, Lisa Beyer, Hongyuan Zhang, Hsin-I Jen, Rizwan Yousaf and 6 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. eLife · 2025
    Article
  14. Article
  15. bioRxiv : the preprint server for biology · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. EDNRB2 regulates fate, migration, and maturation of hair cell precursors in regenerating avian auditory epithelium explants.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  20. Combined AAV-mediated specific Gjb2 expression restores hearing in DFNB1 mouse models.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Amrita A IyerDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, United States.
Ishwar HosamaniDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, United States.
John D NguyenDepartment of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine of the University of Southern California, Eli and Edythe Broad Center for Regenerative Medicine and Stem Cell Biology at USC, Los Angeles, United States.
Tiantian CaiProgram in Developmental Biology, Baylor College of Medicine, Houston, United States.
Sunita SinghDepartment of Neuroscience, Baylor College of Medicine, Houston, United States.
Melissa M McGovernDepartment of Neuroscience, Baylor College of Medicine, Houston, United States.
Lisa BeyerDepartment of Otolaryngology-Head and Neck Surgery, University of Michigan, Ann Arbor, United States.
Hongyuan ZhangDepartment of Neuroscience, Baylor College of Medicine, Houston, United States.
Hsin-I JenProgram in Developmental Biology, Baylor College of Medicine, Houston, United States.
Rizwan YousafDepartment of Neuroscience, Baylor College of Medicine, Houston, United States.
Onur BirolProgram in Developmental Biology, Baylor College of Medicine, Houston, United States.
Jenny J SunDepartment of Neuroscience, Baylor College of Medicine, Houston, United States.
Russell S RayDepartment of Neuroscience, Baylor College of Medicine, Houston, United States.ORCID 0000-0001-9610-2703
Yehoash RaphaelDepartment of Otolaryngology-Head and Neck Surgery, University of Michigan, Ann Arbor, United States.
Neil SegilDepartment of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine of the University of Southern California, Eli and Edythe Broad Center for Regenerative Medicine and Stem Cell Biology at USC, Los Angeles, United States.ORCID 0000-0002-0441-2067
Andrew K GrovesDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, United States.ORCID 0000-0002-0784-7998
Baylor College of Medicine · USUniversity of Michigan · USUniversity of Southern California · US

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Michael M Ittmann · 2007 to 2026
$73.9M
VISION RESEARCH CENTERP30EY002520 · NEI · BAYLOR COLLEGE OF MEDICINE · PI Samuel M Wu · 1985 to 2026
$14.8M
Enhancing Atoh1 function in hair cell regenerationR01DC014832 · NIDCD · WASHINGTON UNIVERSITY · PI Gabriel Corfas, Andrew K Groves · 2016 to 2026
$6.7M
Epigenetic mechanisms underlying the failure of hair cell regeneration in mammalsR01DC015829 · NIDCD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MCMAHON, ANDREW P., OGHALAI, JOHN S · 2018 to 2022
$2.8M
Training in Developmental Biology, Stem Cells and RegenerationT32HD060549 · NICHD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Gage D Crump · 2011 to 2026
$2.5M
High Throughput Genomic Sequencer at BCM Core FacilityS10OD023469 · OD · BAYLOR COLLEGE OF MEDICINE · PI CHEN, RUI · 2017 to 2017
$600k
Rapid production and dissemination of intersectional genetic alleles for the study of nervous system circuit development and function in the mouse.R21OD025327 · OD · BAYLOR COLLEGE OF MEDICINE · PI RAY, RUSSELL S · 2019 to 2020
$436k
BD Biosciences Special Order LSRIIS10RR024574 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI LUMPKIN, ELLEN A · 2009 to 2009
$430k
Acquisition of the Fluidigm system to accelerate functional genomics researchS10OD018033 · OD · BAYLOR COLLEGE OF MEDICINE · PI CHEN, RUI · 2014 to 2014
$396k
Acquisition of 10X Genomics Chromium Instrument to Accelerate Genomic and Single Cell Transcriptomic ResearchS10OD025240 · OD · BAYLOR COLLEGE OF MEDICINE · PI DODDAPANENI, HARSHA VARDHAN · 2018 to 2018
$125k
NCI NIH HHS P30 CA125123NCRR NIH HHS S10 RR024574NEI NIH HHS P30 EY002520NICHD NIH HHS T32 HD060549NIDCD NIH HHS R01 DC014832NIDCD NIH HHS R01 DC015829NIH HHS R21 OD025327NIH HHS S10 OD018033NIH HHS S10 OD023469NIH HHS S10 OD025240
6 · The paper itself

Abstract

Reprogramming of the cochlea with hair-cell-specific transcription factors such as ATOH1 has been proposed as a potential therapeutic strategy for hearing loss. ATOH1 expression in the developing cochlea can efficiently induce hair cell regeneration but the efficiency of hair cell reprogramming declines rapidly as the cochlea matures. We developed Cre-inducible mice to compare hair cell reprogramming with ATOH1 alone or in combination with two other hair cell transcription factors, GFI1 and POU4F3. In newborn mice, all transcription factor combinations tested produced large numbers of cells with the morphology of hair cells and rudimentary mechanotransduction properties. However, 1 week later, only a combination of ATOH1, GFI1 and POU4F3 could reprogram non-sensory cells of the cochlea to a hair cell fate, and these new cells were less mature than cells generated by reprogramming 1 week earlier. We used scRNA-seq and combined scRNA-seq and ATAC-seq to suggest at least two impediments to hair cell reprogramming in older animals. First, hair cell gene loci become less epigenetically accessible in non-sensory cells of the cochlea with increasing age. Second, signaling from hair cells to supporting cells, including Notch signaling, can prevent reprogramming of many supporting cells to hair cells, even with three hair cell transcription factors. Our results shed light on the molecular barriers that must be overcome to promote hair cell regeneration in the adult cochlea.

Indexed as

Cellular ReprogrammingHair Cells, Auditory, InnerMechanotransduction, CellularAnimalsBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsEpigenesis, GeneticHomeodomain ProteinsMiceSignal TransductionTranscription Factor Brn-3CTranscription FactorsAtoh1 protein, mouseBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsGfi1 protein, mouseHomeodomain ProteinsPou4f3 protein, mouseTranscription Factor Brn-3CTranscription Factorscochleadevelopmental biologyhair cellmouseregenerationregenerative medicinereprogrammingstem cellstranscription factors

Identifiers

PMID36445327
PMCPMC9708077
OpenAlexW4310239676

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.