Evidence map›Paper›PMID 36499607›Full record

ArticleInternational journal of molecular sciences2022

Novel Genes Involved in Hypertrophic Cardiomyopathy: Data of Transcriptome and Methylome Profiling.

Ivan Kiselev, Maxim Kozin, Natalia Baulina, Maria Pisklova, Ludmila Danilova, Alexandr Zotov, Olga Chumakova, Dmitry Zateyshchikov, Olga Favorova

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Ivan KiselevE.I. Chazov National Medical Research Center for Cardiology, Moscow 121552, Russia.ORCID 0000-0003-3366-4113
Maxim KozinE.I. Chazov National Medical Research Center for Cardiology, Moscow 121552, Russia.
Natalia BaulinaE.I. Chazov National Medical Research Center for Cardiology, Moscow 121552, Russia.ORCID 0000-0001-8767-2958
Maria PisklovaE.I. Chazov National Medical Research Center for Cardiology, Moscow 121552, Russia.
Ludmila DanilovaJohns Hopkins School of Medicine, Baltimore, MD 21205, USA.ORCID 0000-0003-2813-3094
Alexandr ZotovE.I. Chazov National Medical Research Center for Cardiology, Moscow 121552, Russia.
Olga ChumakovaE.I. Chazov National Medical Research Center for Cardiology, Moscow 121552, Russia.ORCID 0000-0003-2373-1183
Dmitry ZateyshchikovE.I. Chazov National Medical Research Center for Cardiology, Moscow 121552, Russia.ORCID 0000-0001-7065-2045
Olga FavorovaE.I. Chazov National Medical Research Center for Cardiology, Moscow 121552, Russia.ORCID 0000-0002-5271-6698
Pirogov Russian National Research Medical University · RUCentral State Medical Academy · RUJohns Hopkins University · USNational Medical Research Center of Cardiology · RU

Funding

Russian Science Foundation 20-15-00353
6 · The paper itself

Abstract

Hypertrophic cardiomyopathy (HCM) is the most common inherited heart disease; its pathogenesis is still being intensively studied to explain the reasons for the significant genetic and phenotypic heterogeneity of the disease. To search for new genes involved in HCM development, we analyzed gene expression profiles coupled with DNA methylation profiles in the hypertrophied myocardia of HCM patients. The transcriptome analysis identified significant differences in the levels of 193 genes, most of which were underexpressed in HCM. The methylome analysis revealed 1755 nominally significant differentially methylated positions (DMPs), mostly hypomethylated in HCM. Based on gene ontology enrichment analysis, the majority of biological processes, overrepresented by both differentially expressed genes (DEGs) and DMP-containing genes, are involved in the regulation of locomotion and muscle structure development. The intersection of 193 DEGs and 978 DMP-containing genes pinpointed eight common genes, the expressions of which correlated with the methylation levels of the neighboring DMPs. Half of these genes (

Indexed as

Cardiomyopathy, HypertrophicTranscriptomeDNA MethylationGene Expression ProfilingGene OntologyHumansVesicular Glutamate Transport Protein 1SLC17A7 protein, humanVesicular Glutamate Transport Protein 1DNA methylationgene expressionhypertrophic cardiomyopathymethylomepathway analysistranscriptome

Identifiers

PMID36499607
PMCPMC9739701
OpenAlexW4310675716

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.