Evidence map›Paper›PMID 36503721›Full record

ArticleeLife2022

Bidirectional promoter activity from expression cassettes can drive off-target repression of neighboring gene translation.

Emily Nicole Powers, Charlene Chan, Ella Doron-Mandel, Lidia Llacsahuanga Allcca, Jenny Kim Kim, Marko Jovanovic, Gloria Ann Brar

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Sentinel plants enable quantitative monitoring of bioavailable nitrate in soils and microbial environments.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  10. Optimized vectors for genetic engineering ofMolecular biology of the cell · 2025
    Article
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  14. The lncRNAGenes & development · 2024
    Article
  15. Repression ofbioRxiv : the preprint server for biology · 2024
    Article
  16. Article
  17. Disruption of theJournal of fungi (Basel, Switzerland) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Emily Nicole PowersDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0003-4497-7318
Charlene ChanDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.
Ella Doron-MandelDepartment of Biological Sciences, Columbia University, New York, United States.
Lidia Llacsahuanga AllccaDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.
Jenny Kim KimDepartment of Biological Sciences, Columbia University, New York, United States.
Marko JovanovicDepartment of Biological Sciences, Columbia University, New York, United States.
Gloria Ann BrarDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0002-8560-9581
Columbia University · USUniversity of California, Berkeley · USQB3 · US

Funding

Illuminating the gene regulatory strategies underlying yeast meiosis and beyondR35GM134886 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Gloria Ann Brar · 2020 to 2026
$3.1M
Regulation of Protein Production Dynamics:RNA Binding Proteins and the Ribosome CodeR35GM128802 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI JOVANOVIC, MARKO · 2018 to 2022
$2.3M
NIGMS NIH HHS R35 GM128802NIGMS NIH HHS R35 GM134886
6 · The paper itself

Abstract

Targeted selection-based genome-editing approaches have enabled many fundamental discoveries and are used routinely with high precision. We found, however, that replacement of

Indexed as

Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDEAD-box RNA HelicasesHumansPromoter Regions, GeneticProtein BiosynthesisDBP1 protein, S cerevisiaeDEAD-box RNA HelicasesSaccharomyces cerevisiae Proteinsalternative transcriptsbidirectional transcriptionchromosomesgene expressiongeneticsgenome editinggenomicsneighboring gene effectS. cerevisiaetranscriptional interference

Identifiers

PMID36503721
PMCPMC9754628
OpenAlexW4311156422

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.