Evidence map›Paper›PMID 36504387›Full record

ArticleG3 (Bethesda, Md.)2023

Gene amplification mutations originate prior to selective stress in Acinetobacter baylyi.

Jennifer A Herrmann, Agata Koprowska, Tesa J Winters, Nancy Villanueva, Victoria D Nikityuk, Feini Pek, Elizabeth M Reis, Constancia Z Dominguez, Daniel Davis, Eric McPherson and 11 more

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Jennifer A HerrmannDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.
Agata KoprowskaDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.
Tesa J WintersDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.
Nancy VillanuevaDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.
Victoria D NikityukDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.
Feini PekDepartment of Mathematics and Statistics, California State University, Sacramento, CA 95819-6051, USA.
Elizabeth M ReisDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.
Constancia Z DominguezDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.
Daniel DavisDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.
Eric McPhersonDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.
Staci R RoccoDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.
Cynthia RecendezDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.
Shyla M DifuntorumDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.
Kelly FaethDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.
Mario D LopezDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.
Habeeba M AwwadDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.
Rola A GhobashyDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.
Lauren CappielloDepartment of Mathematics and Statistics, California State University, Sacramento, CA 95819-6051, USA.
Ellen L NeidleDepartment of Microbiology, University of Georgia, Athens, GA 30602-2605, USA.
Semarhy Quiñones-SotoDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.
Andrew B ReamsDepartment of Biological Sciences, California State University, Sacramento, CA 95819-6077, USA.

Funding

Sacramento State RISE ProgramR25GM122667 · NIGMS · CALIFORNIA STATE UNIVERSITY SACRAMENTO · PI GONZALEZ-ORTA, ENID T · 2017 to 2021
$1.3M
NIGMS NIH HHS R25 GM122667
6 · The paper itself

Abstract

The controversial theory of adaptive amplification states gene amplification mutations are induced by selective environments where they are enriched due to the stress caused by growth restriction on unadapted cells. We tested this theory with three independent assays using an Acinetobacter baylyi model system that exclusively selects for cat gene amplification mutants. Our results demonstrate all cat gene amplification mutant colonies arise through a multistep process. While the late steps occur during selection exposure, these mutants derive from low-level amplification mutant cells that form before growth-inhibiting selection is imposed. During selection, these partial mutants undergo multiple secondary steps generating higher amplification over several days to multiple weeks to eventually form visible high-copy amplification colonies. Based on these findings, amplification in this Acinetobacter system can be explained by a natural selection process that does not require a stress response. These findings have fundamental implications to understanding the role of growth-limiting selective environments on cancer development. We suggest duplication mutations encompassing growth factor genes may serve as new genomic biomarkers to facilitate early cancer detection and treatment, before high-copy amplification is attained.

Indexed as

AcinetobacterNeoplasmsGene AmplificationHumansMutationAcinetobacteradaptive amplificationadaptive mutationcancercopy number alteration (CNA)copy number variation (CNV)evolutionfluctuation testgene amplificationgene duplicationgene duplication amplification (GDA)natural selectionreplica platingstationary-phase mutagenesisstress induced mutation

Identifiers

PMID36504387
PMCPMC9997567

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.