Evidence map›Paper›PMID 36507737›Full record

ArticleClinical pharmacology and therapeutics2023

Genomewide Association Study Identifies Copy Number Variants Associated With Warfarin Dose Response and Risk of Venous Thromboembolism in African Americans.

Honghong Zhang, Cristina Alarcon, Larisa H Cavallari, Edith Nutescu, Gemma L Carvill, Minoli A Perera, Wenndy Hernandez

Open access · greenAbstract read
In one paragraph

Article in Clinical pharmacology and therapeutics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Honghong ZhangDepartment of Pharmacology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, USA.
Cristina AlarconDepartment of Pharmacology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, USA.
Larisa H CavallariDepartment of Pharmacotherapy and Translational Research, Center for Pharmacogenomics and Precision Medicine, College of Pharmacy, University of Florida, Gainesville, Florida, USA.ORCID 0000-0002-7184-5292
Edith NutescuDepartment of Pharmacy Practice, College of Pharmacy, University of Illinois Chicago, Chicago, Illinois, USA.
Gemma L CarvillDepartment of Pharmacology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, USA.
Minoli A Perera *Department of Pharmacology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, USA.ORCID 0000-0002-1146-2791
Wenndy Hernandez *Section of Cardiology, University of Chicago, Chicago, Illinois, USA.ORCID 0000-0003-1753-4634
Northwestern University · USUniversity of Florida · USUniversity of Illinois Chicago · USUniversity of Illinois Urbana-Champaign · US

Funding

African American Cardiovascular pharmacogenetic CONsorTium (ACCOuNT): discovery and translationU54MD010723 · NIMHD · NORTHWESTERN UNIVERSITY AT CHICAGO · PI MELTZER, DAVID O, PERERA, MINOLI A · 2016 to 2020
$9.5M
Institutional Career Development Core (Chapter 1)KL2TR002387 · NCATS · UNIVERSITY OF CHICAGO · PI ERIC C BEYER, Lisa L Barnes · 2017 to 2026
$7.6M
Mechanisms Underlying Vascular AgingR01HL136962 · NHLBI · UNIVERSITY OF CHICAGO · PI LIAO, JAMES KUANG-JAN · 2018 to 2021
$1.8M
Comprehensive studies of novel SNPs affecting warfarin dose in African AmericansR21HL106097 · NHLBI · UNIVERSITY OF CHICAGO · PI PERERA, MINOLI A · 2011 to 2012
$437k
NCATS NIH HHS KL2 TR002387NHLBI NIH HHS R01 HL136962NHLBI NIH HHS R21 HL106097NIMHD NIH HHS U54 MD010723
6 · The paper itself

Abstract

The anticoagulant warfarin is commonly used to control and prevent thrombotic disorders, such as venous thromboembolism (VTE), which disproportionately afflicts African Americans. Despite the importance of copy number variants (CNVs), few studies have focused on characterizing and understanding their role in drug response and disease risk among African Americans. In this study, we conduct the first genome-wide analysis of CNVs to more comprehensively account for the contribution of genetic variation in warfarin dose requirement and VTE risk among African Americans. We used hidden Markov models to detect CNVs from high-throughput single-nucleotide polymorphism arrays for 340 African American participants in the International Warfarin Pharmacogenetics Consortium. We identified 11,570 CNVs resulting in 2,038 copy number variable regions (CNVRs) and found 3 CNVRs associated with warfarin dose requirement and 3 CNVRs associated with VTE risk in African Americans. CNVRs 1q31.2del and 6q14.1del were associated with increased warfarin dose requirement (β = 11.18 and 4.94, respectively; P

Indexed as

Venous ThromboembolismWarfarinAnticoagulantsBlack or African AmericanDNA Copy Number VariationsGenome-Wide Association StudyHumansPolymorphism, Single NucleotideAnticoagulantsWarfarin

Identifiers

PMID36507737
PMCPMC11238476
OpenAlexW4311159500

What Socratic holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.