Evidence map›Paper›PMID 36542479›Full record

ArticleGenome biology and evolution2023

Genome Reference Assembly for Bottlenecked Southern Australian Koalas.

Adam Mark Blanchard, Richard David Emes, Alex David Greenwood, Nadine Holmes, Matthew William Loose, Gail Katherine McEwen, Joanne Meers, Natasha Speight, Rachael Eugenie Tarlinton

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. GigaByte (Hong Kong, China) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Adam Mark BlanchardSchool of Veterinary Medicine and Science, University of Nottingham, Leicestershire, United Kingdom.ORCID 0000-0001-6991-7210
Richard David EmesSchool of Veterinary Medicine and Science, University of Nottingham, Leicestershire, United Kingdom.
Alex David GreenwoodLeibniz Institute for Zoo and Wildlife Research, Berlin, Germany.ORCID 0000-0002-8249-1565
Nadine HolmesSchool of Life Sciences, University of Nottingham, United Kingdom.
Matthew William LooseSchool of Life Sciences, University of Nottingham, United Kingdom.ORCID 0000-0002-5264-0929
Gail Katherine McEwenLeibniz Institute for Zoo and Wildlife Research, Berlin, Germany.
Joanne MeersSchool of Veterinary Science, University of Queensland, Australia.
Natasha SpeightSchool of Animal and Veterinary Sciences, University of Adelaide, Australia.
Rachael Eugenie TarlintonSchool of Veterinary Medicine and Science, University of Nottingham, Leicestershire, United Kingdom.
University of Nottingham · GBLeibniz Institute for Zoo and Wildlife Research · DEThe University of Adelaide · AUThe University of Queensland · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Koala populations show marked differences in inbreeding levels and in the presence or absence of the endogenous Koala retrovirus (KoRV). These genetic differences among populations may lead to severe disease impacts threatening koala population viability. In addition, the recent colonization of the koala genome by KoRV provides a unique opportunity to study the process of retroviral adaptation to vertebrate genomes and the impact this has on speciation, genome structure, and function. The genome build described here is from an animal from the bottlenecked Southern population free of endogenous and exogenous KoRV. It provides a more contiguous genome build than the previous koala reference derived from an animal from a more outbred Northern population and is the first koala genome from a KoRV polymerase-free animal.

Indexed as

Endogenous RetrovirusesGammaretrovirusPhascolarctidaeRetroviridae InfectionsAnimalsAustraliaRetroviridaeassemblygenomeskoalas

Identifiers

PMID36542479
PMCPMC9887267
OpenAlexW4312058222

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.