Evidence map›Paper›PMID 36577381›Full record

ArticleCell reports2022

Toward structural-omics of the bovine retinal pigment epithelium.

Christopher E Morgan, Zhemin Zhang, Masaru Miyagi, Marcin Golczak, Edward W Yu

Abstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Christopher E MorganDepartment of Pharmacology, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA; Department of Chemistry, Thiel College, Greenville, PA 16125, USA.
Zhemin ZhangDepartment of Pharmacology, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA.
Masaru MiyagiDepartment of Pharmacology, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA.
Marcin GolczakDepartment of Pharmacology, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA; Cleveland Center for Membrane and Structural Biology, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA.
Edward W YuDepartment of Pharmacology, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA; Cleveland Center for Membrane and Structural Biology, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA. Electronic address: edward.w.yu@case.edu.

Funding

Regulation of vitamin A metabolism in the eyeR01EY023948 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI GOLCZAK, MARCIN BERNARD · 2014 to 2023
$3.8M
Emerging antibiotic resistance in Gram-negative pathogensR01AI145069 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI YU, EDWARD W · 2019 to 2023
$3.3M
LTQ-Orbitrap Velos instrumentS10RR031537 · NCRR · CLEVELAND CLINIC LERNER COM-CWRU · PI WILLARD, BELINDA BELLE · 2011 to 2011
$600k
NCRR NIH HHS S10 RR031537NEI NIH HHS R01 EY023948NIAID NIH HHS R01 AI145069
6 · The paper itself

Abstract

The use of an integrated systems biology approach to investigate tissues and organs has been thought to be impracticable in the field of structural biology, where the techniques mainly focus on determining the structure of a particular biomacromolecule of interest. Here, we report the use of cryoelectron microscopy (cryo-EM) to define the composition of a raw bovine retinal pigment epithelium (RPE) lysate. From this sample, we simultaneously identify and solve cryo-EM structures of seven different RPE enzymes whose functions affect neurotransmitter recycling, iron metabolism, gluconeogenesis, glycolysis, axonal development, and energy homeostasis. Interestingly, dysfunction of these important proteins has been directly linked to several neurodegenerative disorders, including Huntington's disease, amyotrophic lateral sclerosis (ALS), Parkinson's disease, Alzheimer's disease, and schizophrenia. Our work underscores the importance of cryo-EM in facilitating tissue and organ proteomics at the atomic level.

Indexed as

Parkinson DiseaseRetinal Pigment EpitheliumAnimalsCattleCryoelectron MicroscopyGlycolysisProteinsProteinsaspartyl aminopeptidasebovine retinal pigment epitheliumCP: Developmental biologycryo-EMdihydropyrimidinase-related protein 2ferritinfructosebisphosphate aldolaseglutamine synthetaseglyceraldehyde 3-phosphate dehydrogenasemitochondrial creatine kinase

Identifiers

PMID36577381
PMCPMC9875382

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.