Evidence map›Paper›PMID 36579163›Full record

ArticleEvolution letters2022

Impact of

Emma V Waters, Liam A Tucker, Jana K Ahmed, John Wain, Gemma C Langridge

Open access · goldAbstract read
In one paragraph

Article in Evolution letters, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Genomic diversity of non-typhoidalMicrobial genomics · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Microbial genomics · 2024
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Emma V WatersMicrobes in the Food Chain Quadram Institute Bioscience Norwich NR4 7UQ United Kingdom.
Liam A TuckerMicrobes in the Food Chain Quadram Institute Bioscience Norwich NR4 7UQ United Kingdom.
Jana K AhmedThe Wellcome Trust Sanger Institute Cambridge CB10 1SA United Kingdom.
John WainMicrobes in the Food Chain Quadram Institute Bioscience Norwich NR4 7UQ United Kingdom.
Gemma C LangridgeMicrobes in the Food Chain Quadram Institute Bioscience Norwich NR4 7UQ United Kingdom.ORCID https://orcid.org/0000-0001-8037-2741
Quadram Institute · GBUniversity of East Anglia · GBWellcome Sanger Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In addition to nucleotide variation, many bacteria also undergo changes at a much larger scale via rearrangement of their genome structure (GS) around long repeat sequences. These rearrangements result in genome fragments shifting position and/or orientation in the genome without necessarily affecting the underlying nucleotide sequence. To date, scalable techniques have not been applied to GS identification, so it remains unclear how extensive this variation is and the extent of its impact upon gene expression. However, the emergence of multiplexed, long-read sequencing overcomes the scale problem, as reads of several thousand bases are routinely produced that can span long repeat sequences to identify the flanking chromosomal DNA, allowing GS identification. Genome rearrangements were generated in

Indexed as

Genome structurelong‐read sequencingRNAseq

Identifiers

PMID36579163
PMCPMC9783417
OpenAlexW4309396737

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.