Evidence map›Paper›PMID 36609407›Full record

ArticleNature communications2023

Structure of the Sec14 domain of Kalirin reveals a distinct class of lipid-binding module in RhoGEFs.

Yunfeng Li, Yulia Pustovalova, Tzanko I Doukov, Jeffrey C Hoch, Richard E Mains, Betty A Eipper, Bing Hao

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yunfeng LiDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT, 06030, USA.ORCID 0000-0001-6501-9093
Yulia PustovalovaDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT, 06030, USA.
Tzanko I DoukovMacromolecular Crystallography Group, Stanford Synchrotron Radiation Light Source, SLAC National Accelerator Laboratory, Stanford University, Stanford, CA, 94309, USA.ORCID 0000-0001-8625-2572
Jeffrey C HochDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT, 06030, USA.ORCID 0000-0002-9230-2019
Richard E MainsDepartment of Neuroscience, University of Connecticut Health Center, Farmington, CT, 06030, USA.ORCID 0000-0003-1154-1331
Betty A EipperDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT, 06030, USA.ORCID 0000-0003-1171-5557
Bing HaoDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT, 06030, USA. bhao@uchc.edu.ORCID 0000-0003-3029-5340
UConn Health · USSLAC National Accelerator Laboratory · US

Funding

A Synchrotron Radiation Structural Biology ResourcesP30GM133894 · NIGMS · STANFORD UNIVERSITY · PI Aina E. Cohen, KEITH O HODGSON · 2020 to 2026
$43.3M
X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Vivian Stojanoff · 2019 to 2026
$38.6M
TRD3 NMRbox: Bayesian AnalyticsP41GM111135 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HOCH, JEFFREY C · 2015 to 2024
$14.0M
CELL BIOLOGY OF BIOACTIVE PEPTIDE SECRETIONR01DK032948 · NIDDK · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI EIPPER, ELIZABETH ANNE, MAINS, RICHARD E · 1986 to 2019
$7.3M
Substrate targeting mechanism of a DesCEND pathwayR01GM135592 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HAO, BING · 2020 to 2023
$1.9M
Development and Application of Non-Fourier Method for Biomolecular NMRR01GM123249 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HOCH, JEFFREY C · 2018 to 2021
$1.5M
Structural studies of substrate recognition and specificity by the SCF ubiquitinR01GM099948 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HAO, BING · 2012 to 2016
$1.4M
Cell Biology of Bioactive Peptide SecretionR56DK032948 · NIDDK · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI MAINS, RICHARD E · 2008 to 2008
$303k
NIDDK NIH HHS R01 DK032948NIDDK NIH HHS R56 DK032948NIGMS NIH HHS P30 GM133893NIGMS NIH HHS P30 GM133894NIGMS NIH HHS P41 GM111135NIGMS NIH HHS R01 GM099948NIGMS NIH HHS R01 GM123249NIGMS NIH HHS R01 GM135592
6 · The paper itself

Abstract

Gated entry of lipophilic ligands into the enclosed hydrophobic pocket in stand-alone Sec14 domain proteins often links lipid metabolism to membrane trafficking. Similar domains occur in multidomain mammalian proteins that activate small GTPases and regulate actin dynamics. The neuronal RhoGEF Kalirin, a central regulator of cytoskeletal dynamics, contains a Sec14 domain (Kal

Indexed as

ActinsCytoskeletonAnimalsLipidsMammalsRho Guanine Nucleotide Exchange FactorsActinsLipidsRho Guanine Nucleotide Exchange Factors

Identifiers

PMID36609407
PMCPMC9823006
OpenAlexW4313649207

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.