ArticleBMC plant biology2023
Genetic diversity analysis and variety identification using SSR and SNP markers in melon.
Article in BMC plant biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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21 citing papers in PubMed, 48 citations in OpenAlex.
- Advances in mutant characterization for detecting causal mutations in crop plants.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Review
- Genetic Diversity and SNP-Based Fingerprinting of 94 Pumpkin Cultivars: Database Establishment and Population Analysis.Plants (Basel, Switzerland) · 2026Article
- Extensive Pollen Flow and Historical Population Expansions Shaped the Phylogeographic Pattern ofEcology and evolution · 2026Article
- Exclusion versus detoxification: contrasting molecular strategies of aluminium tolerance in rice landraces of Northeast India.Plant cell reports · 2026Article
- Genetic Analysis and Fingerprint Construction for Thick-Skinned Melon (Plants (Basel, Switzerland) · 2025Article
- A novel EST-SSR fingerprint database development strategy for accurate identification of asparagus cultivars.BMC plant biology · 2025Article
- Genetic Diversity and Population Structure of Shanlan Upland Rice Germplasm Based on SSR Markers.Plants (Basel, Switzerland) · 2025Article
- Genome-wide association study of agronomic traits in winter wheat (Triticum aestivum L.) using a custom SNP marker set.BMC plant biology · 2025Article
- The Complete Chloroplast Genomes of ThreeCurrent issues in molecular biology · 2025Article
- Article
- SSR_VibraProfiler: a Python package for accurate classification of varieties using SSRs with intra-variety specificity and inter-variety polymorphism.Plant methods · 2025Article
- Comparative analysis of chloroplast genomes and phylogenetic relationships of different pitaya cultivars.BMC genomics · 2025Article
- Pathotypes and Simple Sequence Repeat (SSR)-Based Genetic Diversity ofMicroorganisms · 2025Article
- Krait2: a versatile software for microsatellite investigation, visualization and marker development.BMC genomics · 2025Article
- Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote.BMC plant biology · 2024Article
- Crop Landraces and Indigenous Varieties: A Valuable Source of Genes for Plant Breeding.Plants (Basel, Switzerland) · 2024Review
- Article
- The complete chloroplast genome sequences of nine melon varieties (Frontiers in genetics · 2024Article
- Genome-wide association study of the loci and candidate genes associated with agronomic traits in Amomum villosum Lour.PloS one · 2024Article
- Newly developed genomic SSR markers revealed the population structure and genetic characteristics of abaca (Biotechnologia · 2024Article
Corrections and comments
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Authors and funding
7 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Melon is an important horticultural crop with a pleasant aromatic flavor and abundance of health-promoting substances. Numerous melon varieties have been cultivated worldwide in recent years, but the high number of varieties and the high similarity between them poses a major challenge for variety evaluation, discrimination, as well as innovation in breeding. Recently, simple sequence repeats (SSRs) and single nucleotide polymorphisms (SNPs), two robust molecular markers, have been utilized as a rapid and reliable method for variety identification. To elucidate the genetic structure and diversity of melon varieties, we screened out 136 perfect SSRs and 164 perfect SNPs from the resequencing data of 149 accessions, including the most representative lines worldwide. This study established the DNA fingerprint of 259 widely-cultivated melon varieties in China using Target-seq technology. All melon varieties were classified into five subgruops, including ssp. agrestis, ssp. melo, muskmelon and two subgroups of foreign individuals. Compared with ssp. melo, the ssp. agrestis varieties might be exposed to a high risk of genetic erosion due to their extremely narrow genetic background. Increasing the gene exchange between ssp. melo and ssp. agrestis is therefore necessary in the breeding procedure. In addition, analysis of the DNA fingerprints of the 259 melon varieties showed a good linear correlation (R
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