Evidence map›Paper›PMID 36675007›Full record

ArticleInternational journal of molecular sciences2023

Endogenous Retrovirus RNA Expression Differences between Race, Stage and HPV Status Offer Improved Prognostication among Women with Cervical Cancer.

Jill Alldredge, Vinay Kumar, James Nguyen, Brooke E Sanders, Karina Gomez, Kay Jayachandran, Jin Zhang, Julie Schwarz, Farah Rahmatpanah

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. How Oncovirus Affects Drug Resistance in Cancer Cells.Recent patents on anti-cancer drug discovery · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Jill AlldredgeDepartment of Obstetrics and Gynecology, University of Colorado, Aurora, CO 80045, USA.ORCID 0000-0002-8690-5104
Vinay KumarDepartment of Pathology and Laboratory Medicine, University of California, Irvine, CA 92697, USA.
James NguyenDepartment of Pathology and Laboratory Medicine, University of California, Irvine, CA 92697, USA.
Brooke E SandersDepartment of Obstetrics and Gynecology, University of Colorado, Aurora, CO 80045, USA.
Karina GomezDepartment of Obstetrics and Gynecology, University of Colorado, Aurora, CO 80045, USA.
Kay JayachandranDepartment of Radiation Oncology, Washington University School of Medicine, St. Louis, MO 63108, USA.
Jin ZhangDepartment of Radiation Oncology, Washington University School of Medicine, St. Louis, MO 63108, USA.
Julie SchwarzDepartment of Radiation Oncology, Washington University School of Medicine, St. Louis, MO 63108, USA.
Farah RahmatpanahDepartment of Pathology and Laboratory Medicine, University of California, Irvine, CA 92697, USA.
University of California, Irvine · USUniversity of Colorado Anschutz Medical Campus · USWashington University in St. Louis · US

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI RICHARD A. VAN ETTEN · 1994 to 2026
$57.9M
University of California Health Participation in the National COVID Cohort Collaborative (N3C)UL1TR001414 · NCATS · UNIVERSITY OF CALIFORNIA-IRVINE · PI COOPER, DAN M, VILAIN, ERIC J. · 2015 to 2023
$35.1M
Human Endogenous retroviruses as potential early markers for Alzheimer's diseaseR01CA226570 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI RAHMATPANAH, FARAH BAKHSHIAN · 2019 to 2023
$2.2M
HPV alternative splicing in cervical cancer radiation responseK22CA237839 · NCI · WASHINGTON UNIVERSITY · PI ZHANG, JIN · 2021 to 2023
$460k
NCATS NIH HHS UL1 TR001414NCI NIH HHS K22 CA237839NCI NIH HHS K22CA237839NCI NIH HHS P30 CA062203NCI NIH HHS R01 CA226570NCI NIH HHS R01CA226570NIH HHS T-32 Ruth L. Kirschstein NRSA Institutional Training Research Grant
6 · The paper itself

Abstract

Endogenous human retroviruses (ERVs) are remnants of exogenous retroviruses that have integrated into the human genome. Using publicly available RNA-seq data from 63 cervical cancer patients, we investigated the expression of ERVs in cervical cancers. Four aspects of cervical cancer were investigated: patient ancestral background, tumor HPV type, tumor stage and patient survival. Between the racial subgroups, 74 ERVs were significantly differentially expressed, with Black Americans having 30 upregulated and 44 downregulated (including MER21C, HERV9-int, and HERVH-int) ERVs when compared to White Americans. We found that 3313 ERVs were differentially expressed between HPV subgroups, including MER41A, HERVH-int and HERVK9. There were 28 downregulated (including MLT1D and HERVH-int) and 61 upregulated (including MER41A) ERVs in locally advanced-stage compared to early-stage samples. Tissue microarrays of cervical cancer patients were used to investigate the protein expression of ERVs with protein coding potential (i.e., HERVK and ERV3). Significant differences in protein expression of ERV3 (

Indexed as

Endogenous RetrovirusesPapillomavirus InfectionsUterine Cervical NeoplasmsFemaleHumansNeoplasm Recurrence, LocalRNARNAcervical cancerethnic disparityHPVhuman endogenous retrovirusesprognostic model

Identifiers

PMID36675007
PMCPMC9864224
OpenAlexW4315795601

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.