Evidence map›Paper›PMID 36695023›Full record

ArticleG3 (Bethesda, Md.)2023

The effect of Drosophila attP40 background on the glomerular organization of Or47b olfactory receptor neurons.

Qichen Duan, Rachel Estrella, Allison Carson, Yang Chen, Pelin C Volkan

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. eLife · 2023
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Qichen DuanDepartment of Biology, Duke University, Durham, NC 27708, USA.
Rachel EstrellaDepartment of Biology, Duke University, Durham, NC 27708, USA.
Allison CarsonDepartment of Biology, Duke University, Durham, NC 27708, USA.
Yang ChenDepartment of Biology, Duke University, Durham, NC 27708, USA.ORCID 0000-0001-9767-4033
Pelin C VolkanDepartment of Biology, Duke University, Durham, NC 27708, USA.ORCID 0000-0002-0001-0626

Funding

Epigenetic Reprogramming of Behaviors with Sensory ExperienceR01NS109401 · NINDS · DUKE UNIVERSITY · PI JONES, CORBIN D, VOLKAN, PELIN C · 2018 to 2022
$2.0M
NINDS NIH HHS R01 NS109401
6 · The paper itself

Abstract

Bacteriophage integrase-directed insertion of transgenic constructs into specific genomic loci has been widely used by Drosophila community. The attP40 landing site located on the second chromosome gained popularity because of its high inducible transgene expression levels. Here, unexpectedly, we found that homozygous attP40 chromosome disrupts normal glomerular organization of Or47b olfactory receptor neuron (ORN) class in Drosophila. This effect is not likely to be caused by the loss of function of Msp300, where the attP40 docking site is inserted. Moreover, the attP40 background seems to genetically interact with the second chromosome Or47b-GAL4 driver, which results in a similar glomerular defect. Whether the ORN phenotype is caused by the neighbouring genes around Msp300 locus in the presence of attP40-based insertions or a second unknown mutation in the attP40 background remains elusive. Our findings tell a cautionary tale about using this popular transgenic landing site, highlighting the importance of rigorous controls to rule out the attP40 landing site-associated background effects.

Indexed as

Drosophila ProteinsOlfactory Receptor NeuronsAnimalsAnimals, Genetically ModifiedDrosophilaMutationDrosophila ProteinsattP40axon terminal organizationDrosophilaolfactory receptor neuron

Identifiers

PMID36695023
PMCPMC10085800

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.