Evidence map›Paper›PMID 36696962›Full record

ArticleJournal of chemical information and modeling2023

Modeling the Orthosteric Binding Site of the G Protein-Coupled Odorant Receptor OR5K1.

Alessandro Nicoli, Franziska Haag, Patrick Marcinek, Ruiming He, Johanna Kreißl, Jörg Stein, Alessandro Marchetto, Andreas Dunkel, Thomas Hofmann, Dietmar Krautwurst and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of chemical information and modeling, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

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  5. Review
  6. TBM preferred to AlphaFold 3 for functional models of insect odorant receptors.Computational and structural biotechnology journal · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Alessandro NicoliLeibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany.ORCID 0000-0001-6177-9749
Franziska HaagLeibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany.ORCID 0000-0003-4210-0475
Patrick MarcinekLeibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany.
Ruiming HeLeibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany.
Johanna KreißlLeibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany.
Jörg SteinLeibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany.
Alessandro MarchettoComputational Biomedicine, Institute for Advanced Simulations (IAS)-5/Institute for Neuroscience and Medicine (INM)-9, Forschungszentrum Jülich, 52428Jülich, Germany.
Andreas DunkelLeibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany.ORCID 0000-0002-4445-6144
Thomas HofmannChair of Food Chemistry and Molecular Sensory Science, Technical University of Munich, 85354Freising, Germany.ORCID 0000-0003-4057-7165
Dietmar KrautwurstLeibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany.ORCID 0000-0002-3350-8682
Antonella Di PizioLeibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany.ORCID 0000-0002-8520-5165
Leibniz-Institute for Food Systems Biology at the Technical University of Munich · DEForschungszentrum Jülich · DETechnical University of Munich · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

With approximately 400 encoding genes in humans, odorant receptors (ORs) are the largest subfamily of class A G protein-coupled receptors (GPCRs). Despite its high relevance and representation, the odorant-GPCRome is structurally poorly characterized: no experimental structures are available, and the low sequence identity of ORs to experimentally solved GPCRs is a significant challenge for their modeling. Moreover, the receptive range of most ORs is unknown. The odorant receptor OR5K1 was recently and comprehensively characterized in terms of cognate agonists. Here, we report two additional agonists and functional data of the most potent compound on two mutants, L104

Indexed as

Receptors, OdorantBinding SitesGTP-Binding ProteinsHumansLigandsOdorantsReceptors, G-Protein-CoupledGTP-Binding ProteinsLigandsReceptors, G-Protein-CoupledReceptors, Odorant

Identifiers

PMID36696962
PMCPMC10091413
OpenAlexW4318023216

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.