Evidence map›Paper›PMID 36709327›Full record

ArticleNature communications2023

Iron-sulfur clusters are involved in post-translational arginylation.

Verna Van, Janae B Brown, Corin R O'Shea, Hannah Rosenbach, Ijaz Mohamed, Nna-Emeka Ejimogu, Toan S Bui, Veronika A Szalai, Kelly N Chacón, Ingrid Span and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
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  6. Review
  7. Article
  8. A kinetic mathematical model of comprehensive iron metabolism in a respiring yeast cell: a basic-pathways approach to solving a large system dynamically.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2026
    Article
  9. The response regulator BqsR/CarR controls ferrous iron (FebioRxiv : the preprint server for biology · 2025
    Article
  10. ThebioRxiv : the preprint server for biology · 2025
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Verna VanDepartment of Chemistry and Biochemistry, University of Maryland, Baltimore County, Baltimore, MD, 21250, USA.
Janae B BrownDepartment of Chemistry and Biochemistry, University of Maryland, Baltimore County, Baltimore, MD, 21250, USA.ORCID 0000-0003-1329-4063
Corin R O'SheaDepartment of Molecular and Cellular Pharmacology, University of Miami, Miller School of Medicine, Miami, FL, 33136, USA.ORCID 0000-0001-9937-9070
Hannah RosenbachInstitut für Physikalische Biologie, Heinrich-Heine-Universität Düsseldorf, 40225, Düsseldorf, Germany.
Ijaz MohamedDepartment of Chemistry and Biochemistry, University of Maryland, Baltimore County, Baltimore, MD, 21250, USA.
Nna-Emeka EjimoguDepartment of Chemistry and Biochemistry, University of Maryland, Baltimore County, Baltimore, MD, 21250, USA.ORCID 0000-0002-9779-7428
Toan S BuiDepartment of Chemistry and Biochemistry, University of Maryland, Baltimore County, Baltimore, MD, 21250, USA.
Veronika A SzalaiPhysical Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, 20899, USA.
Kelly N ChacónDepartment of Chemistry, Reed College, Portland, OR, 97202, USA.ORCID 0000-0003-1332-7283
Ingrid SpanInstitut für Physikalische Biologie, Heinrich-Heine-Universität Düsseldorf, 40225, Düsseldorf, Germany.ORCID 0000-0002-2892-4825
Fangliang ZhangDepartment of Molecular and Cellular Pharmacology, University of Miami, Miller School of Medicine, Miami, FL, 33136, USA.
Aaron T SmithDepartment of Chemistry and Biochemistry, University of Maryland, Baltimore County, Baltimore, MD, 21250, USA. smitha@umbc.edu.ORCID 0000-0002-9332-8683

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
U-RISE at University of Maryland Baltimore CountyT34GM136497 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI PHYLLIS R ROBINSON · 2020 to 2026
$9.5M
Deciphering the Mechanisms of Pathogenic Ferrous Iron Acquisition and Eukaryotic Post-Translational ArginylationR35GM133497 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI Aaron T Smith · 2019 to 2026
$2.9M
Oxidative stress response and metabolic reprogramming by protein posttranslational arginylationR01GM138557 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI ZHANG, FANGLIANG · 2020 to 2023
$1.3M
NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM138557NIGMS NIH HHS R35 GM133497NIGMS NIH HHS T34 GM136497
6 · The paper itself

Abstract

Eukaryotic arginylation is an essential post-translational modification that modulates protein stability and regulates protein half-life. Arginylation is catalyzed by a family of enzymes known as the arginyl-tRNA transferases (ATE1s), which are conserved across the eukaryotic domain. Despite their conservation and importance, little is known regarding the structure, mechanism, and regulation of ATE1s. In this work, we show that ATE1s bind a previously undiscovered [Fe-S] cluster that is conserved across evolution. We characterize the nature of this [Fe-S] cluster and find that the presence of the [Fe-S] cluster in ATE1 is linked to its arginylation activity, both in vitro and in vivo, and the initiation of the yeast stress response. Importantly, the ATE1 [Fe-S] cluster is oxygen-sensitive, which could be a molecular mechanism of the N-degron pathway to sense oxidative stress. Taken together, our data provide the framework of a cluster-based paradigm of ATE1 regulatory control.

Indexed as

AminoacyltransferasesIron-Sulfur ProteinsProtein Processing, Post-TranslationalProteinsSaccharomyces cerevisiaeAminoacyltransferasesIron-Sulfur ProteinsProteins

Identifiers

PMID36709327
PMCPMC9884297

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.