Evidence map›Paper›PMID 36712034›Full record

ArticlebioRxiv : the preprint server for biology2023

p53 controls choice between apoptotic and non-apoptotic death following DNA damage.

Megan E Honeywell, Marie S Isidor, Nicholas W Harper, Rachel E Fontana, Peter Cruz-Gordillo, Sydney A Porto, Cameron S Fraser, Kristopher A Sarosiek, David A Guertin, Jessica B Spinelli and 1 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Megan E HoneywellDepartment of Systems Biology, UMass Chan Medical School, Worcester, MA, 01605 USA.
Marie S IsidorProgram in Molecular Medicine, UMass Chan Medical School, Worcester, MA, 01605 USA.
Nicholas W HarperDepartment of Systems Biology, UMass Chan Medical School, Worcester, MA, 01605 USA.
Rachel E FontanaDepartment of Systems Biology, UMass Chan Medical School, Worcester, MA, 01605 USA.
Peter Cruz-GordilloDepartment of Systems Biology, UMass Chan Medical School, Worcester, MA, 01605 USA.
Sydney A PortoDepartment of Systems Biology, UMass Chan Medical School, Worcester, MA, 01605 USA.
Cameron S FraserJohn B. Little Center for Radiation Sciences, Harvard TH Chan School of Public Health, Boston, MA, 02115 USA.
Kristopher A SarosiekJohn B. Little Center for Radiation Sciences, Harvard TH Chan School of Public Health, Boston, MA, 02115 USA.
David A GuertinProgram in Molecular Medicine, UMass Chan Medical School, Worcester, MA, 01605 USA.
Jessica B SpinelliProgram in Molecular Medicine, UMass Chan Medical School, Worcester, MA, 01605 USA.
Michael J LeeDepartment of Systems Biology, UMass Chan Medical School, Worcester, MA, 01605 USA.
University of Massachusetts Chan Medical School · USUniversity of Copenhagen · DK

Funding

Mechanistic Target of Rapamycin Pathways in Metabolism and Energy ExpenditureR01DK094004 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GUERTIN, DAVID A · 2013 to 2023
$4.5M
Quantitative and functional analysis of brown fat nutrient fluxes in vivo and its role in organ metabolite exchangeR01DK127175 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GUERTIN, DAVID A · 2021 to 2025
$2.7M
Developmental regulation of apoptosis as a modifiable driver of radiotherapy-induced neurocognitive impairment in pediatric patientsR37CA248565 · NCI · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI Kristopher Andrew Sarosiek · 2020 to 2026
$2.6M
Environmental Regulation of Cellular Responses to DNA DamageR01GM127559 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LEE, MICHAEL JUNGHO · 2018 to 2022
$1.8M
Identifying targetable apoptotic vulnerabilities for the treatment of AL amyloidosisR01DK125263 · NIDDK · HARVARD SCHOOL OF PUBLIC HEALTH · PI SAROSIEK, KRISTOPHER ANDREW · 2020 to 2023
$1.4M
Activation of non-apoptotic cell death by the DNA damage responseF31CA268847 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI HONEYWELL, MEGAN ELIZABETH · 2022 to 2023
$64k
EPA EP-W-17-011NCI NIH HHS F31 CA268847NCI NIH HHS R37 CA248565NIDDK NIH HHS R01 DK094004NIDDK NIH HHS R01 DK125263NIDDK NIH HHS R01 DK127175NIGMS NIH HHS R01 GM127559
6 · The paper itself

Abstract

DNA damage can activate apoptotic and non-apoptotic forms of cell death; however, it remains unclear what features dictate which type of cell death is activated. We report that p53 controls the choice between apoptotic and non-apoptotic death following exposure to DNA damage. In contrast to the conventional model, which suggests that p53-deficient cells should be resistant to DNA damage-induced cell death, we find that p53-deficient cells die at high rates following DNA damage, but exclusively using non-apoptotic mechanisms. Our experimental data and computational modeling reveal that non-apoptotic death in p53-deficient cells has not been observed due to use of assays that are either insensitive to cell death, or that specifically score apoptotic cells. Using functional genetic screening - with an analysis that enables computational inference of the drug-induced death rate - we find in p53-deficient cells that DNA damage activates a mitochondrial respiration-dependent form of cell death, called MPT-driven necrosis. Cells deficient for p53 have high basal respiration, which primes MPT-driven necrosis. Finally, using metabolite profiling, we identified mitochondrial activity-dependent metabolic vulnerabilities that can be targeted to potentiate the lethality of DNA damage specifically in p53-deficient cells. Our findings reveal how the dual functions of p53 in regulating mitochondrial activity and the DNA damage response combine to facilitate the choice between apoptotic and non-apoptotic death.

Indexed as

apoptosiscell deathDNA damagefunctional genomicsMPT-driven necrosisp53

Identifiers

PMID36712034
PMCPMC9882237
OpenAlexW4317209837

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.