Evidence map›Paper›PMID 36714824›Full record

ArticlePNAS nexus2022

Mass-selective and ice-free electron cryomicroscopy protein sample preparation via native electrospray ion-beam deposition.

Tim K Esser, Jan Böhning, Paul Fremdling, Mark T Agasid, Adam Costin, Kyle Fort, Albert Konijnenberg, Joshua D Gilbert, Alan Bahm, Alexander Makarov and 6 more

Open access · goldAbstract read
In one paragraph

Article in PNAS nexus, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
11.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Phospholipids Differentially Regulate CaACS chemical biology · 2024
    Article
  10. Article
  11. Article
  12. Review
  13. Mass spectrometers as cryoEM grid preparation instruments.Current opinion in structural biology · 2023
    Review
  14. Charting the molecular landscape of the cell.Structure (London, England : 1993) · 2023
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Dissecting the structural heterogeneity of proteins by native mass spectrometry.Protein science : a publication of the Protein Society · 2023
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 4 countries.

Tim K EsserDepartment of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, UK.ORCID https://orcid.org/0000-0002-1174-4131
Jan BöhningSir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX1 3RE, UK.ORCID https://orcid.org/0000-0002-6242-1041
Paul FremdlingDepartment of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, UK.ORCID https://orcid.org/0000-0002-1052-3783
Mark T AgasidDepartment of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, UK.
Adam CostinSir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX1 3RE, UK.ORCID https://orcid.org/0000-0001-5334-557X
Kyle FortThermo Fisher Scientific, Hanna-Kunath-Straße 11, 28199 Bremen, Germany.
Albert KonijnenbergThermo Fisher Scientific, Zwaanstraat 31G/H, 5651 CA Eindhoven, The Netherlands.
Joshua D GilbertThermo Fisher Scientific, 5350 NE Dawson Creek Drive, Hillsboro, OR 97124, USA.
Alan BahmThermo Fisher Scientific, 5350 NE Dawson Creek Drive, Hillsboro, OR 97124, USA.
Alexander MakarovThermo Fisher Scientific, Hanna-Kunath-Straße 11, 28199 Bremen, Germany.
Carol V RobinsonDepartment of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, UK.ORCID https://orcid.org/0000-0001-7829-5505
Justin L P BeneschDepartment of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, UK.
Lindsay BakerDivision of Structural Biology, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, UK.
Tanmay A M BharatSir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX1 3RE, UK.ORCID https://orcid.org/0000-0002-0168-0277
Joseph GaultDepartment of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, UK.
Stephan RauschenbachDepartment of Chemistry, University of Oxford, Mansfield Road, Oxford OX1 3TA, UK.
University of Oxford · GBThermo Fisher Scientific (United States) · USMRC Laboratory of Molecular Biology · GBThermo Fisher Scientific (Germany) · DEThermo Fisher Scientific (Netherlands) · NLUtrecht University · NL

Funding

Medical Research Council MC_UP_1201/31
6 · The paper itself

Abstract

Despite tremendous advances in sample preparation and classification algorithms for electron cryomicroscopy (cryo-EM) and single-particle analysis (SPA), sample heterogeneity remains a major challenge and can prevent access to high-resolution structures. In addition, optimization of preparation conditions for a given sample can be time-consuming. In the current work, it is demonstrated that native electrospray ion-beam deposition (native ES-IBD) is an alternative, reliable approach for the preparation of extremely high-purity samples, based on mass selection in vacuum. Folded protein ions are generated by native electrospray ionization, separated from other proteins, contaminants, aggregates, and fragments, gently deposited on cryo-EM grids, frozen in liquid nitrogen, and subsequently imaged by cryo-EM. We demonstrate homogeneous coverage of ice-free cryo-EM grids with mass-selected protein complexes. SPA reveals that the complexes remain folded and assembled, but variations in secondary and tertiary structures are currently limiting information in 2D classes and 3D EM density maps. We identify and discuss challenges that need to be addressed to obtain a resolution comparable to that of the established cryo-EM workflow. Our results show the potential of native ES-IBD to increase the scope and throughput of cryo-EM for protein structure determination and provide an essential link between gas-phase and solution-phase protein structures.

Indexed as

cryo-EMice-free sample preparationion-beam depositionnative mass spectrometrystructural biology

Identifiers

PMID36714824
PMCPMC9802471
OpenAlexW4290188423

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.