Evidence map›Paper›PMID 36722494›Full record

ReviewImmunological reviews2023

Speed and navigation control of thymocyte development by the fetal T-cell gene regulatory network.

Brendan W MacNabb, Ellen V Rothenberg

Open access · greenAbstract readReview
In one paragraph

Review in Immunological reviews, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Transcriptional network dynamics in early T cell development.The Journal of experimental medicine · 2024
    Review
  5. Stabilization of β-Catenin Directs HEB to Limit Thymic Selection.Journal of immunology (Baltimore, Md. : 1950) · 2024
    Article
  6. Parallel origins and functions of T cells and ILCs.Clinical and experimental immunology · 2023
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Brendan W MacNabbDivision of Biology & Biological Engineering, California Institute of Technology, Pasadena, California, USA.ORCID 0000-0003-1827-0247
Ellen V RothenbergDivision of Biology & Biological Engineering, California Institute of Technology, Pasadena, California, USA.ORCID 0000-0002-3901-347X
California Institute of Technology · US

Funding

System dynamics and gene network architecture of early T-cell developmentR01HD100039 · NICHD · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ELLEN V. ROTHENBERG · 2019 to 2026
$4.1M
NICHD NIH HHS R01 HD100039
6 · The paper itself

Abstract

T-cell differentiation is a tightly regulated developmental program governed by interactions between transcription factors (TFs) and chromatin landscapes and affected by signals received from the thymic stroma. This process is marked by a series of checkpoints: T-lineage commitment, T-cell receptor (TCR)β selection, and positive and negative selection. Dynamically changing combinations of TFs drive differentiation along the T-lineage trajectory, through mechanisms that have been most extensively dissected in adult mouse T-lineage cells. However, fetal T-cell development differs from adult in ways that suggest that these TF mechanisms are not fully deterministic. The first wave of fetal T-cell differentiation occurs during a unique developmental window during thymic morphogenesis, shows more rapid kinetics of differentiation with fewer rounds of cell division, and gives rise to unique populations of innate lymphoid cells (ILCs) and invariant γδT cells that are not generated in the adult thymus. As the characteristic kinetics and progeny biases are cell-intrinsic properties of thymic progenitors, the differences could be based on distinct TF network circuitry within the progenitors themselves. Here, we review recent single-cell transcriptome data that illuminate the TF networks involved in T-cell differentiation in the fetal and adult mouse thymus.

Indexed as

Immunity, InnateThymocytesAnimalsCell DifferentiationGene Regulatory NetworksHumansLymphocytesMiceReceptors, Antigen, T-Cell, alpha-betaThymus GlandReceptors, Antigen, T-Cell, alpha-betafetal-adult comparisongamma delta T cellinnate-like lymphocyteslineage commitmenttranscription factors

Identifiers

PMID36722494
PMCPMC10771342
OpenAlexW4318755323

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.