Evidence map›Paper›PMID 36724784›Full record

ArticleMolecular cell2023

Two distinct long-range synaptic complexes promote different aspects of end processing prior to repair of DNA breaks by non-homologous end joining.

Christopher J Buehl, Noah J Goff, Steven W Hardwick, Martin Gellert, Tom L Blundell, Wei Yang, Amanda K Chaplin, Katheryn Meek

Open access · greenAbstract read
In one paragraph

Article in Molecular cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 41 citations in OpenAlex.

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  14. Perspective in the Mechanisms for Repairing Sperm DNA Damage.Reproductive sciences (Thousand Oaks, Calif.) · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Christopher J BuehlCollege of Veterinary Medicine, Department of Microbiology & Molecular Genetics, Department of Pathobiology & Diagnostic Investigation, Michigan State University, East Lansing, MI 48824, USA.
Noah J GoffCollege of Veterinary Medicine, Department of Microbiology & Molecular Genetics, Department of Pathobiology & Diagnostic Investigation, Michigan State University, East Lansing, MI 48824, USA.
Steven W HardwickCryoEM Facility, Department of Biochemistry, University of Cambridge, Sanger Building, Tennis Court Road, Cambridge CB2 1GA, UK.
Martin GellertLaboratory of Molecular Biology, NIDDK, National Institutes of Health, Bethesda, MD 20892, USA.
Tom L BlundellDepartment of Biochemistry, University of Cambridge, Sanger Building, Tennis Court Road, Cambridge CB2 1GA, UK.
Wei YangLaboratory of Molecular Biology, NIDDK, National Institutes of Health, Bethesda, MD 20892, USA.
Amanda K ChaplinDepartment of Biochemistry, University of Cambridge, Sanger Building, Tennis Court Road, Cambridge CB2 1GA, UK; Leicester Institute for Structural and Chemical Biology, Department of Molecular and Cell Biology, University of Leicester, Leicester, UK. Electronic address: ac853@leicester.ac.uk.
Katheryn MeekCollege of Veterinary Medicine, Department of Microbiology & Molecular Genetics, Department of Pathobiology & Diagnostic Investigation, Michigan State University, East Lansing, MI 48824, USA. Electronic address: kmeek@msu.edu.
Michigan State University · USNational Institutes of Health · USUniversity of Cambridge · GBUniversity of Leicester · GB

Funding

Structural studies of the post-cleavage complex in V(D)J recombinationZIADK036167 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GELLERT, MARTIN F. · 2009 to 2025
$21.4M
Structural and mechanistic studies of V(D)J recombinationZIADK036147 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI YANG, WEI · 2009 to 2025
$6.6M
Relevant Targets of the DNA Dependent Protein KinaseR01AI048758 · NIAID · MICHIGAN STATE UNIVERSITY · PI MEEK, KATHERYN D · 2000 to 2016
$5.2M
Defining the mechanistic basis of ATM’s impact on VDJ recombinationR01AI147634 · NIAID · MICHIGAN STATE UNIVERSITY · PI MEEK, KATHERYN D, YU, KEFEI · 2019 to 2024
$1.9M
Does overexpression of DNA polymerase theta sensitize cancers to G-quadruplex binding drugs?R21CA240875 · NCI · MICHIGAN STATE UNIVERSITY · PI MEEK, KATHERYN D · 2019 to 2020
$371k
NCI NIH HHS R21 CA240875NIAID NIH HHS R01 AI048758NIAID NIH HHS R01 AI147634Wellcome Trust 200814/Z/16/Z
6 · The paper itself

Abstract

Non-homologous end joining is the major double-strand break repair (DSBR) pathway in mammals. DNA-PK is the hub and organizer of multiple steps in non-homologous end joining (NHEJ). Recent high-resolution structures show how two distinct NHEJ complexes "synapse" two DNA ends. One complex includes a DNA-PK dimer mediated by XLF, whereas a distinct DNA-PK dimer forms via a domain-swap mechanism where the C terminus of Ku80 from one DNA-PK protomer interacts with another DNA-PK protomer in trans. Remarkably, the distance between the two synapsed DNA ends in both dimers is the same (∼115 Å), which matches the distance observed in the initial description of an NHEJ long-range synaptic complex. Here, a mutational strategy is used to demonstrate distinct cellular function(s) of the two dimers: one promoting fill-in end processing, while the other promotes DNA end resection. Thus, the specific DNA-PK dimer formed (which may be impacted by DNA end structure) dictates the mechanism by which ends will be made ligatable.

Indexed as

DNA-Binding ProteinsDNA Breaks, Double-StrandedAnimalsDNADNA-Activated Protein KinaseDNA End-Joining RepairDNA RepairKu AutoantigenMammalsProtein SubunitsDNADNA-Activated Protein KinaseDNA-Binding ProteinsKu AutoantigenProtein SubunitsDNA-dependent protein kinaseDNA-PKDNA-PKcsKuNHEJnon-homologous end joiningXLFXRCC4

Identifiers

PMID36724784
PMCPMC9992237
OpenAlexW4318920541

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.