Evidence map›Paper›PMID 36739885›Full record

ArticleThe Plant cell2023

SPINDLY mediates O-fucosylation of hundreds of proteins and sugar-dependent growth in Arabidopsis.

Yang Bi, Ruben Shrestha, Zhenzhen Zhang, Chuan-Chih Hsu, Andres V Reyes, Sumudu Karunadasa, Peter R Baker, Jason C Maynard, Yang Liu, Amirmansoor Hakimi and 5 more

Open access · hybridAbstract read
In one paragraph

Article in The Plant cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  5. Article
  6. The plant epigenome governed by nutrients and metabolism.Current opinion in plant biology · 2025
    Review
  7. Impact of alternative splicing on Arabidopsis proteome.bioRxiv : the preprint server for biology · 2025
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Yang BiDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA.ORCID 0000-0003-1270-1747
Ruben ShresthaDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA.ORCID 0000-0001-5379-6362
Zhenzhen ZhangDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA.ORCID 0000-0003-1617-8543
Chuan-Chih HsuDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA.ORCID 0000-0002-7100-1401
Andres V ReyesDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA.ORCID 0000-0001-8761-802X
Sumudu KarunadasaDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA.ORCID 0000-0003-0993-3950
Peter R BakerDepartment of Pharmaceutical Chemistry, University of California at San Francisco, San Francisco, California 94143, USA.ORCID 0000-0001-7826-9251
Jason C MaynardDepartment of Pharmaceutical Chemistry, University of California at San Francisco, San Francisco, California 94143, USA.ORCID 0000-0001-7838-5420
Yang LiuThermoFisher Scientific, San Jose, California 95134, USA.ORCID 0000-0003-1097-2455
Amirmansoor HakimiThermoFisher Scientific, San Jose, California 95134, USA.ORCID 0000-0002-5759-8432
Daniel Lopez-FerrerThermoFisher Scientific, San Jose, California 95134, USA.ORCID 0000-0002-3620-5679
Tahmid HassanThermoFisher Scientific, Somerset, New Jersey 08873, USA.ORCID 0000-0002-9200-7941
Robert J ChalkleyDepartment of Pharmaceutical Chemistry, University of California at San Francisco, San Francisco, California 94143, USA.ORCID 0000-0002-9757-7302
Shou-Ling XuDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA.ORCID 0000-0002-6741-9506
Zhi-Yong WangDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA.ORCID 0000-0003-4602-3390
Carnegie Institution for Science · USThermo Fisher Scientific (United States) · USUniversity of California, San Francisco · US

Funding

Genetic Biochemical Studies of Signaling in Growth and AcclimationR01GM066258 · NIGMS · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI ZHIYONG WANG · 2002 to 2026
$10.5M
Nutrient regulation of Alternative splicing and transcription by O-GlcNAcylationR01GM135706 · NIGMS · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI XU, SHOULING · 2020 to 2024
$1.8M
NIGMS NIH HHS R01 GM066258NIGMS NIH HHS R01 GM135706
6 · The paper itself

Abstract

The recent discovery of SPINDLY (SPY)-catalyzed protein O-fucosylation revealed a novel mechanism for regulating nucleocytoplasmic protein functions in plants. Genetic evidence indicates the important roles of SPY in diverse developmental and physiological processes. However, the upstream signal controlling SPY activity and the downstream substrate proteins O-fucosylated by SPY remain largely unknown. Here, we demonstrated that SPY mediates sugar-dependent growth in Arabidopsis (Arabidopsis thaliana). We further identified hundreds of O-fucosylated proteins using lectin affinity chromatography followed by mass spectrometry. All the O-fucosylation events quantified in our proteomic analyses were undetectable or dramatically decreased in the spy mutants, and thus likely catalyzed by SPY. The O-fucosylome includes mostly nuclear and cytosolic proteins. Many O-fucosylated proteins function in essential cellular processes, phytohormone signaling, and developmental programs, consistent with the genetic functions of SPY. The O-fucosylome also includes many proteins modified by O-linked N-acetylglucosamine (O-GlcNAc) and by phosphorylation downstream of the target of rapamycin (TOR) kinase, revealing the convergence of these nutrient signaling pathways on key regulatory functions such as post-transcriptional/translational regulation and phytohormone responses. Our study identified numerous targets of SPY/O-fucosylation and potential nodes of crosstalk among sugar/nutrient signaling pathways, enabling future dissection of the signaling network that mediates sugar regulation of plant growth and development.

Indexed as

ArabidopsisArabidopsis ProteinsPlant Growth RegulatorsProteomicsRepressor ProteinsSugarsArabidopsis ProteinsPlant Growth RegulatorsRepressor ProteinsSugars

Identifiers

PMID36739885
PMCPMC10118272
OpenAlexW4319264021

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.