Evidence map›Paper›PMID 36740243›Full record

ArticlePlant physiology2023

SPINDLY O-fucosylates nuclear and cytoplasmic proteins involved in diverse cellular processes in plants.

Rodolfo Zentella, Yan Wang, Emily Zahn, Jianhong Hu, Liang Jiang, Jeffrey Shabanowitz, Donald F Hunt, Tai-Ping Sun

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

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  12. Frontiers in plant science · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Rodolfo ZentellaDepartment of Biology, Duke University, Durham, North Carolina 27708, USA.ORCID 0000-0003-3986-6250
Yan WangDepartment of Biology, Duke University, Durham, North Carolina 27708, USA.ORCID 0000-0003-3262-9930
Emily ZahnDepartment of Chemistry, University of Virginia, Charlottesville, Virginia 22904, USA.
Jianhong HuDepartment of Biology, Duke University, Durham, North Carolina 27708, USA.ORCID 0000-0003-3927-9240
Liang JiangDepartment of Biology, Duke University, Durham, North Carolina 27708, USA.ORCID 0000-0002-7221-2956
Jeffrey ShabanowitzDepartment of Chemistry, University of Virginia, Charlottesville, Virginia 22904, USA.ORCID 0000-0001-5750-3539
Donald F HuntDepartment of Chemistry, University of Virginia, Charlottesville, Virginia 22904, USA.ORCID 0000-0003-2815-6368
Tai-Ping SunDepartment of Biology, Duke University, Durham, North Carolina 27708, USA.ORCID 0000-0001-5223-2936
Duke University · USUniversity of Virginia · US

Funding

PROTEIN SEQUENCING BY TANDEM MASS SPECTROMETRYR01GM037537 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HUNT, DONALD F · 1987 to 2023
$17.8M
Structure and Function Analyses of DELLA Interacting Proteins in ArabidopsisR01GM100051 · NIGMS · DUKE UNIVERSITY · PI SUN, TAI-PING · 2012 to 2021
$2.4M
NIGMS NIH HHS R01 GM037537NIGMS NIH HHS R01 GM100051NIH HHS GM100051
6 · The paper itself

Abstract

SPINDLY (SPY) is a novel nucleocytoplasmic protein O-fucosyltransferase that regulates target protein activity or stability via O-fucosylation of specific Ser/Thr residues. Previous genetic studies indicate that AtSPY regulates plant development during vegetative and reproductive growth by modulating gibberellin and cytokinin responses. AtSPY also regulates the circadian clock and plant responses to biotic and abiotic stresses. The pleiotropic phenotypes of spy mutants point to the likely role of AtSPY in regulating key proteins functioning in diverse cellular pathways. However, very few AtSPY targets are known. Here, we identified 88 SPY targets from Arabidopsis (Arabidopsis thaliana) and Nicotiana benthamiana via the purification of O-fucosylated peptides using Aleuria aurantia lectin followed by electron transfer dissociation-MS/MS analysis. Most AtSPY targets were nuclear proteins that function in DNA repair, transcription, RNA splicing, and nucleocytoplasmic transport. Cytoplasmic AtSPY targets were involved in microtubule-mediated cell division/growth and protein folding. A comparison with the published O-linked-N-acetylglucosamine (O-GlcNAc) proteome revealed that 30% of AtSPY targets were also O-GlcNAcylated, indicating that these distinct glycosylations could co-regulate many protein functions. This study unveiled the roles of O-fucosylation in modulating many key nuclear and cytoplasmic proteins and provided a valuable resource for elucidating the regulatory mechanisms involved.

Indexed as

ArabidopsisArabidopsis ProteinsAcetylglucosaminePlantsRepressor ProteinsTandem Mass SpectrometryAcetylglucosamineArabidopsis ProteinsRepressor Proteins

Identifiers

PMID36740243
PMCPMC10022643
OpenAlexW4319263808

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.