Evidence map›Paper›PMID 36747866›Full record

ArticlebioRxiv : the preprint server for biology2023

Multiscale imaging and quantitative analysis of plasma membrane protein-cortical actin interplay.

Aparajita Dasgupta, Huong-Tra Ngo, Deryl Tschoerner, Nicolas Touret, Bruno da Rocha-Azevedo, Khuloud Jaqaman

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Aparajita DasguptaDepartment of Biophysics, University of Texas Southwestern Medical Center; Dallas, TX, USA.
Huong-Tra NgoDepartment of Biophysics, University of Texas Southwestern Medical Center; Dallas, TX, USA.
Deryl TschoernerDepartment of Biophysics, University of Texas Southwestern Medical Center; Dallas, TX, USA.
Nicolas TouretDepartment of Biochemistry, University of Alberta; Edmonton, AB, Canada.
Bruno da Rocha-AzevedoDepartment of Biophysics, University of Texas Southwestern Medical Center; Dallas, TX, USA.
Khuloud JaqamanDepartment of Biophysics, University of Texas Southwestern Medical Center; Dallas, TX, USA.
The University of Texas Southwestern Medical Center · USUniversity of Alberta · CA

Funding

Mechanisms and Functional Consequences of Signaling Protein Organization at MembranesR35GM119619 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI DASGUPTA, APARAJITA KAMALESH · 2016 to 2025
$4.3M
NIGMS NIH HHS R35 GM119619
6 · The paper itself

Abstract

The spatiotemporal organization of cell surface receptors is important for cell signaling. Cortical actin (CA), the subset of the actin cytoskeleton subjacent to the plasma membrane (PM), plays a large role in cell surface receptor organization. This was however shown largely through actin perturbation experiments, which raise concerns of nonspecific effects and preclude quantification of actin architecture and dynamics under unperturbed conditions. These limitations make it challenging to predict how changes in CA properties can affect receptor organization. To derive direct relationships between the architecture and dynamics of CA and the spatiotemporal organization of PM proteins, including cell surface receptors, we developed a multiscale imaging and computational analysis framework based on the integration of single-molecule imaging (SMI) of PM proteins and fluorescent speckle microscopy (FSM) of CA (combined: SMI-FSM) in the same live cell. SMI-FSM revealed differential relationships between PM proteins and CA based on the PM proteins’ actin binding ability, diffusion type and local CA density. It also highlighted the complexity of cell wide actin perturbation, where we found that global changes in actin properties caused by perturbation were not necessarily reflected in the CA properties near PM proteins, and the changes in PM protein properties upon perturbation varied based on the local CA environment. Given the widespread use of SMI as a method to study the spatiotemporal organization of PM proteins and the versatility of SMI-FSM, we expect it to be widely applicable to enable future investigation of the influence of CA architecture and dynamics on different PM proteins, especially in the context of actin-dependent cellular processes, such as cell migration. Significance: Plasma membrane protein organization, an important factor for shaping cellular behaviors, is influenced by cortical actin, the subset of the actin cytoskeleton near the plasma membrane. Yet it is challenging to directly and quantitatively probe this influence. Here, we developed an imaging and analysis approach that combines single-molecule imaging, fluorescent speckle microscopy and computational statistical analysis to characterize and correlate the spatiotemporal organization of plasma membrane proteins and cortical actin. Our approach revealed different relationships between different proteins and cortical actin, and highlighted the complexity of interpreting cell wide actin perturbation experiments. We expect this approach to be widely used to study the influence of cortical actin on different plasma membrane components, especially in actin-dependent processes.

Identifiers

PMID36747866
PMCPMC9900770
OpenAlexW4317797032

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.