Evidence map›Paper›PMID 36748120›Full record

ArticleJournal of anatomy2023

Enhancer trap lines with GFP driven by smad6b and frizzled1 regulatory sequences for the study of epithelial morphogenesis in the developing zebrafish inner ear.

Davide Baldera, Sarah Baxendale, Nicholas J van Hateren, Mar Marzo, Emily Glendenning, Fan-Suo Geng, Kazutomo Yokoya, Robert D Knight, Tanya T Whitfield

Open access · hybridAbstract read
In one paragraph

Article in Journal of anatomy, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Davide BalderaSchool of Biosciences, University of Sheffield, Sheffield, UK.
Sarah BaxendaleSchool of Biosciences, University of Sheffield, Sheffield, UK.ORCID 0000-0002-6760-9457
Nicholas J van HaterenSchool of Biosciences, University of Sheffield, Sheffield, UK.ORCID 0000-0002-0011-9947
Mar MarzoSchool of Biosciences, University of Sheffield, Sheffield, UK.ORCID 0000-0003-1591-0309
Emily GlendenningSchool of Biosciences, University of Sheffield, Sheffield, UK.
Fan-Suo GengBrain and Mind Research Institute, University of Sydney, Sydney, New South Wales, Australia.
Kazutomo YokoyaCentre for Craniofacial and Regenerative Biology, King's College London, Guy's Hospital, London, UK.ORCID 0000-0002-5280-185X
Robert D KnightCentre for Craniofacial and Regenerative Biology, King's College London, Guy's Hospital, London, UK.ORCID 0000-0001-9920-836X
Tanya T WhitfieldSchool of Biosciences, University of Sheffield, Sheffield, UK.ORCID 0000-0003-1575-1504
University of Sheffield · GBGuy's Hospital · GBThe University of Sydney · AU

Funding

Anatomical Society PhD studentshipBiotechnology and Biological Sciences Research Council BB/D020433/1Biotechnology and Biological Sciences Research Council BB/J003050Biotechnology and Biological Sciences Research Council BB/M01021X/1Biotechnology and Biological Sciences Research Council BB/M012522/1Biotechnology and Biological Sciences Research Council BB/S007008/1
6 · The paper itself

Abstract

Live imaging in the zebrafish embryo using tissue-specific expression of fluorescent proteins can yield important insights into the mechanisms that drive sensory organ morphogenesis and cell differentiation. Morphogenesis of the semicircular canal ducts of the vertebrate inner ear requires a complex rearrangement of epithelial cells, including outgrowth, adhesion, fusion and perforation of epithelial projections to generate pillars of tissue that form the hubs of each canal. We report the insertion sites and expression patterns of two enhancer trap lines in the developing zebrafish embryo, each of which highlight different aspects of epithelial cell morphogenesis in the inner ear. A membrane-linked EGFP driven by smad6b regulatory sequences is expressed throughout the otic epithelium, most strongly on the lateral side of the ear and in the sensory cristae. A second enhancer trap line, with cytoplasmic EGFP driven by frizzled1 (fzd1) regulatory sequences, specifically marks cells of the ventral projection and pillar in the developing ear, and marginal cells in the sensory cristae, together with variable expression in the retina and epiphysis, and neurons elsewhere in the developing central nervous system. We have used a combination of methods to identify the insertion sites of these two transgenes, which were generated through random insertion, and show that Targeted Locus Amplification is a rapid and reliable method for the identification of insertion sites of randomly inserted transgenes.

Indexed as

Semicircular CanalsZebrafishAnimalsEpitheliumGene Expression Regulation, DevelopmentalMorphogenesisZebrafish ProteinsZebrafish Proteinsenhancer trap linefrizzled1organogenesisotic vesiclesmad6btargeted locus amplificationzebrafish

Identifiers

PMID36748120
PMCPMC10273346
OpenAlexW4319334373

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.