Evidence map›Paper›PMID 36762707›Full record

ArticleGigaScience2022

Chromosome-level genome and the identification of sex chromosomes in Uloborus diversus.

Jeremiah Miller, Aleksey V Zimin, Andrew Gordus

Open access · goldAbstract read
In one paragraph

Article in GigaScience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jeremiah MillerDepartment of Biology, Johns Hopkins University, Baltimore, MD 21218, USA.
Aleksey V ZiminDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
Andrew GordusDepartment of Biology, Johns Hopkins University, Baltimore, MD 21218, USA.ORCID 0000-0002-5550-0286
Johns Hopkins University · US

Funding

Computational Methods for Genome Assembly, Transcript Assembly, and Variant DiscoveryR01HG006677 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI SALZBERG, STEVEN L. · 2011 to 2025
$10.7M
The Influence of Neuronal Variability on Perception and BehaviorR35GM124883 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Andrew George Gordus · 2017 to 2026
$3.8M
Computational Methods for Microbial and Microbiome Sequence AnalysisR35GM130151 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Steven L. Salzberg · 2019 to 2026
$2.9M
NHGRI NIH HHS R01 HG006677NIGMS NIH HHS R35 GM124883NIGMS NIH HHS R35 GM130151
6 · The paper itself

Abstract

The orb web is a remarkable example of animal architecture that is observed in families of spiders that diverged over 200 million years ago. While several genomes exist for araneid orb-weavers, none exist for other orb-weaving families, hampering efforts to investigate the genetic basis of this complex behavior. Here we present a chromosome-level genome assembly for the cribellate orb-weaving spider Uloborus diversus. The assembly reinforces evidence of an ancient arachnid genome duplication and identifies complete open reading frames for every class of spidroin gene, which encode the proteins that are the key structural components of spider silks. We identified the 2 X chromosomes for U. diversus and identify candidate sex-determining loci. This chromosome-level assembly will be a valuable resource for evolutionary research into the origins of orb-weaving, spidroin evolution, chromosomal rearrangement, and chromosomal sex determination in spiders.

Indexed as

FibroinsSpidersAnimalsGenomePhylogenySex ChromosomesSilkFibroinsSilkarachnidcribellategenomespiderspidroinUloborid

Identifiers

PMID36762707
PMCPMC9912274
OpenAlexW4319825705

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.