Evidence map›Paper›PMID 36778254›Full record

ArticlebioRxiv : the preprint server for biology2023

Archaic Introgression Shaped Human Circadian Traits.

Keila Velazquez-Arcelay, Laura L Colbran, Evonne McArthur, Colin Brand, David Rinker, Justin Siemann, Douglas McMahon, John A Capra

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Keila Velazquez-ArcelayDepartment of Biological Sciences, Vanderbilt University.
Laura L ColbranDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania.
Evonne McArthurVanderbilt University School of Medicine.
Colin BrandDepartment of Epidemiology and Biostatistics, University of California, San Francisco.
David RinkerDepartment of Biological Sciences, Vanderbilt University.
Justin SiemannDepartment of Biological Sciences, Vanderbilt University.
Douglas McMahonDepartment of Biological Sciences, Vanderbilt University.
John A CapraDepartment of Epidemiology and Biostatistics, University of California, San Francisco.
Vanderbilt University · USUniversity of California, San Francisco · USUniversity of Pennsylvania · US

Funding

Postdoctoral Training Program in Genomic MedicineT32HG009495 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI Katherine L. Nathanson, Bogdan Pasaniuc · 2017 to 2026
$4.2M
The Evolution of Gene Regulation and Human DiseaseR35GM127087 · NIGMS · VANDERBILT UNIVERSITY · PI John Anthony Capra · 2018 to 2026
$3.2M
Training Program on Genetic Variation and Human PhenotypesT32GM080178 · NIGMS · VANDERBILT UNIVERSITY · PI COX, NANCY J, SAMUELS, DAVID C · 2007 to 2021
$3.1M
Neurobiology of the Circadian ClockR01GM117650 · NIGMS · VANDERBILT UNIVERSITY · PI MCMAHON, DOUGLAS G · 2015 to 2023
$2.1M
Quantifying the relationship between 3D genome structure and the genetic architecture of common complex diseaseF30HG011200 · NHGRI · VANDERBILT UNIVERSITY · PI MCARTHUR, EVONNE · 2020 to 2022
$108k
NHGRI NIH HHS F30 HG011200NHGRI NIH HHS T32 HG009495NIGMS NIH HHS R01 GM117650NIGMS NIH HHS R35 GM127087NIGMS NIH HHS T32 GM080178
6 · The paper itself

Abstract

Introduction: When the ancestors of modern Eurasians migrated out of Africa and interbred with Eurasian archaic hominins, namely Neanderthals and Denisovans, DNA of archaic ancestry integrated into the genomes of anatomically modern humans. This process potentially accelerated adaptation to Eurasian environmental factors, including reduced ultra-violet radiation and increased variation in seasonal dynamics. However, whether these groups differed substantially in circadian biology, and whether archaic introgression adaptively contributed to human chronotypes remains unknown. Results: Here we traced the evolution of chronotype based on genomes from archaic hominins and present-day humans. First, we inferred differences in circadian gene sequences, splicing, and regulation between archaic hominins and modern humans. We identified 28 circadian genes containing variants with potential to alter splicing in archaics (e.g., Conclusions: These findings identify differences in circadian gene regulation between modern humans and archaic hominins and support the contribution of introgression via coordinated effects on variation in human chronotype.

Indexed as

adaptive evolutionadaptive introgressionchronotypecircadian biologygene expressionNeanderthals

Identifiers

PMID36778254
PMCPMC9915721
OpenAlexW4319224343

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.