Evidence map›Paper›PMID 36792607›Full record

ArticleNature communications2023

Molecular mechanisms of coronary artery disease risk at the PDGFD locus.

Hyun-Jung Kim, Paul Cheng, Stanislao Travisano, Chad Weldy, João P Monteiro, Ramendra Kundu, Trieu Nguyen, Disha Sharma, Huitong Shi, Yi Lin and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 29 citations in OpenAlex.

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  13. Preclinical evaluation of high-resolution CT,European journal of nuclear medicine and molecular imaging · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

Hyun-Jung KimDivision of Cardiovascular Medicine, 300 Pasteur Drive, Falk CVRC, Stanford, CA, 94305, USA.ORCID 0000-0001-6264-0220
Paul ChengDivision of Cardiovascular Medicine, 300 Pasteur Drive, Falk CVRC, Stanford, CA, 94305, USA.ORCID 0000-0003-3429-2702
Stanislao TravisanoDivision of Cardiovascular Medicine, 300 Pasteur Drive, Falk CVRC, Stanford, CA, 94305, USA.ORCID 0000-0001-6453-0367
Chad WeldyDivision of Cardiovascular Medicine, 300 Pasteur Drive, Falk CVRC, Stanford, CA, 94305, USA.
João P MonteiroDivision of Cardiovascular Medicine, 300 Pasteur Drive, Falk CVRC, Stanford, CA, 94305, USA.ORCID 0000-0001-6481-6875
Ramendra KunduDivision of Cardiovascular Medicine, 300 Pasteur Drive, Falk CVRC, Stanford, CA, 94305, USA.
Trieu NguyenDivision of Cardiovascular Medicine, 300 Pasteur Drive, Falk CVRC, Stanford, CA, 94305, USA.ORCID 0000-0001-5647-1301
Disha SharmaDivision of Cardiovascular Medicine, 300 Pasteur Drive, Falk CVRC, Stanford, CA, 94305, USA.
Huitong ShiDivision of Cardiovascular Medicine, 300 Pasteur Drive, Falk CVRC, Stanford, CA, 94305, USA.
Yi LinResearch Center for Intelligent Computing Platforms, Zhejiang Laboratory, Hangzhou, 311121, China.
Boxiang LiuDepartment of Pharmacy, Faculty of Science, National University of Singapore, Singapore, 117543, Singapore.ORCID 0000-0002-2595-4463
Saptarsi HaldarAmgen Inc., 1120 Veterans Blvd, South San Francisco, CA, 94080, USA.
Simon JacksonAmgen Inc., 1120 Veterans Blvd, South San Francisco, CA, 94080, USA.
Thomas QuertermousDivision of Cardiovascular Medicine, 300 Pasteur Drive, Falk CVRC, Stanford, CA, 94305, USA. tomq1@stanford.edu.ORCID 0000-0002-7645-9067
Stanford Medicine · USAmgen (United States) · USNational University of Singapore · SG

Funding

Stanford Center for Connecting DNA Variants to Function and PhenotypeUM1HG011972 · NHGRI · STANFORD UNIVERSITY · PI JESSE M ENGREITZ, THOMAS QUERTERMOUS · 2021 to 2026
$10.5M
Causal variant association mechanisms in TCF21 binding coronary disease lociR01HL134817 · NHLBI · STANFORD UNIVERSITY · PI THOMAS QUERTERMOUS · 2017 to 2026
$6.2M
The SMAD3 signaling network in coronary artery disease riskR01HL139478 · NHLBI · STANFORD UNIVERSITY · PI THOMAS QUERTERMOUS · 2018 to 2026
$3.7M
PDGFD regulates a transcriptional network to modulate smooth muscle cell transition and coronary artery disease riskR01HL156846 · NHLBI · STANFORD UNIVERSITY · PI QUERTERMOUS, THOMAS · 2021 to 2024
$2.7M
Identifying tobacco-genetic interactions through study of the aryl hydrocarbon receptor pathway.R01HL151535 · NHLBI · STANFORD UNIVERSITY · PI QUERTERMOUS, THOMAS · 2021 to 2024
$2.7M
Gene regulatory networks controlling smooth muscle phenotype and vasculardisease riskR01HL171045 · NHLBI · STANFORD UNIVERSITY · PI THOMAS QUERTERMOUS · 2024 to 2026
$2.1M
LncRNA Transcriptional Mechanisms of Coronary Artery Disease RiskR01HL145708 · NHLBI · STANFORD UNIVERSITY · PI QUERTERMOUS, THOMAS · 2019 to 2022
$1.6M
From Locus to Function: Role of ZEB2 in Human Risk of Coronary Artery DiseaseK08HL153798 · NHLBI · STANFORD UNIVERSITY · PI CHENG, PAUL PO SHENG · 2020 to 2024
$933k
ADAR mediated RNA editing is a causal mechanism in coronary artery diseaseK08HL167699 · NHLBI · STANFORD UNIVERSITY · PI Chad S Weldy · 2023 to 2026
$664k
A transcriptional network which governs smooth muscle transition is mediated by causal coronary artery disease gene PDGFDF32HL160067 · NHLBI · STANFORD UNIVERSITY · PI WELDY, CHAD S · 2021 to 2022
$135k
NHGRI NIH HHS UM1 HG011972NHLBI NIH HHS F32 HL160067NHLBI NIH HHS K08 HL153798NHLBI NIH HHS K08 HL167699NHLBI NIH HHS L30 HL159413NHLBI NIH HHS R01 HL134817NHLBI NIH HHS R01 HL139478NHLBI NIH HHS R01 HL145708NHLBI NIH HHS R01 HL151535NHLBI NIH HHS R01 HL156846NHLBI NIH HHS R01 HL171045
6 · The paper itself

Abstract

Genome wide association studies for coronary artery disease (CAD) have identified a risk locus at 11q22.3. Here, we verify with mechanistic studies that rs2019090 and PDGFD represent the functional variant and gene at this locus. Further, FOXC1/C2 transcription factor binding at rs2019090 is shown to promote PDGFD transcription through the CAD promoting allele. With single cell transcriptomic and histology studies with Pdgfd knockdown in an SMC lineage tracing male atherosclerosis mouse model we find that Pdgfd promotes expansion, migration, and transition of SMC lineage cells to the chondromyocyte phenotype. Pdgfd also increases adventitial fibroblast and pericyte expression of chemokines and leukocyte adhesion molecules, which is linked to plaque macrophage recruitment. Despite these changes there is no effect of Pdgfd deletion on overall plaque burden. These findings suggest that PDGFD mediates CAD risk by promoting deleterious phenotypic changes in SMC, along with an inflammatory response that is primarily focused in the adventitia.

Indexed as

AtherosclerosisCoronary Artery DiseaseAllelesAnimalsGenome-Wide Association StudyLymphokinesMaleMicePlatelet-Derived Growth FactorProtein BindingLymphokinesPdgfd protein, mousePlatelet-Derived Growth Factor

Identifiers

PMID36792607
PMCPMC9932166
OpenAlexW4321003261

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.