Evidence map›Paper›PMID 36798355›Full record

ArticlebioRxiv : the preprint server for biology2023

Mitochondrial genome sequencing and analysis of the invasive

Craig F Barrett, Dhanushya Ramachandran, Chih-Hui Chen, Cameron W Corbett, Cynthia D Huebner, Brandon T Sinn, Wen-Bin Yu, Kenji Suetsugu

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 5 countries.

Craig F BarrettDepartment of Biology, West Virginia University, 53 Campus Drive, Morgantown, West Virginia, USA 26506.ORCID 0000-0001-8870-3672
Dhanushya RamachandranDepartment of Biology, West Virginia University, 53 Campus Drive, Morgantown, West Virginia, USA 26506.
Chih-Hui ChenEndemic Species Research Institute, 1 Ming-Sheng East Road, Jiji, Nantou 552, Taiwan.
Cameron W CorbettDepartment of Biology, West Virginia University, 53 Campus Drive, Morgantown, West Virginia, USA 26506.
Cynthia D HuebnerDepartment of Biology, West Virginia University, 53 Campus Drive, Morgantown, West Virginia, USA 26506.
Brandon T SinnDepartment of Biology and Earth Science, Otterbein University, 1 South Grove Street, Westerville, OH USA 43081.
Wen-Bin YuCenter for Integrative Conservation Xishuangbanna Tropical Botanical Garden, CAS Mengla, Yunnan 666303, China.
Kenji SuetsuguDepartment of Biology, Graduate School of Science, Kobe University, 1-1 Rokkodai, Nada-ku, Kobe, 657-8501, Japan.
West Virginia University · USKobe University · JPMin Sheng General Hospital · TWOtterbein University · USXishuangbanna Tropical Botanical Garden · CN

Funding

West Virginia IDEA-CTRU54GM104942 · NIGMS · WEST VIRGINIA UNIVERSITY · PI Sijin Wen · 2012 to 2026
$81.0M
WV INBRE: The Inhibitor of Growth Family Member 4 (ING4) inhibits L-Type Amino Acid Transporter 1 (LAT1) expression to suppress Breast CancerP20GM103434 · NIGMS · MARSHALL UNIVERSITY · PI Trupti Joshi · 2012 to 2026
$61.1M
Regulation of Tight Junction Molecular Composition by Na/K-ATPaseP20GM121299 · NIGMS · MARSHALL UNIVERSITY · PI HAYNES, JENNIFER · 2018 to 2022
$10.6M
NIGMS NIH HHS P20 GM103434NIGMS NIH HHS P20 GM121299NIGMS NIH HHS U54 GM104942
6 · The paper itself

Abstract

Premise of the Research: Plants remain underrepresented among species with sequenced mitochondrial genomes (mitogenomes), due to the difficulty in assembly with short-read technology. Invasive species lag behind crops and other economically important species in this respect, representing a lack of tools for management and land conservation efforts. Methodology: The mitogenome of Pivotal Results: The assembly is 478,010 bp in length and characterized by two large, inverted repeats, and a large, direct repeat. However, the genome could not be circularized, arguing against a "master circle" structure. Long-read assemblies with data subsets revealed several alternative genomic conformations, predominantly associated with large repeats. Plastid-like sequences comprise 2.4% of the genome, with further evidence of Class I and Class II transposable element-like sequences. Phylogenetic analysis placed Conclusions: We present an in-depth analysis of mitogenome structure, content, phylogenetic relationships, and range-wide genomic variation in

Indexed as

grassinvasion genomicslong read sequencingmitogenomePoaceae

Identifiers

PMID36798355
PMCPMC9934601
OpenAlexW4320184230

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.