Evidence map›Paper›PMID 36809258›Full record

ArticleThe Journal of clinical investigation2023

Pathogenic human variant that dislocates GATA2 zinc fingers disrupts hematopoietic gene expression and signaling networks.

Mabel Minji Jung, Siqi Shen, Giovanni A Botten, Thomas Olender, Koichi R Katsumura, Kirby D Johnson, Alexandra A Soukup, Peng Liu, Qingzhou Zhang, Zena D Jensvold and 10 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  7. Pathogenic GATA2 genetic variants utilize an obligate enhancer mechanism to distort a multilineage differentiation program.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 4 countries.

Mabel Minji JungWisconsin Blood Cancer Research Institute, Department of Cell and Regenerative Biology, Carbone Cancer Center, and.
Siqi ShenDepartment of Biostatistics and Biomedical Informatics, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, USA.
Giovanni A BottenChildren's Medical Center Research Institute, Department of Pediatrics, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Thomas OlenderSprott Center for Stem Cell Research, Ottawa Hospital Research Institute-General Hospital, Ottawa, Ontario, Canada.
Koichi R KatsumuraWisconsin Blood Cancer Research Institute, Department of Cell and Regenerative Biology, Carbone Cancer Center, and.
Kirby D JohnsonWisconsin Blood Cancer Research Institute, Department of Cell and Regenerative Biology, Carbone Cancer Center, and.
Alexandra A SoukupWisconsin Blood Cancer Research Institute, Department of Cell and Regenerative Biology, Carbone Cancer Center, and.
Peng LiuDepartment of Biostatistics and Biomedical Informatics, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, USA.
Qingzhou ZhangSprott Center for Stem Cell Research, Ottawa Hospital Research Institute-General Hospital, Ottawa, Ontario, Canada.
Zena D JensvoldDepartment of Biomolecular Chemistry, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, USA.
Peter W LewisDepartment of Biomolecular Chemistry, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, USA.
Robert A BeagrieMRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford, United Kingdom.
Jason Kk LowSchool of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales, Australia.
Lihua YangSchool of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales, Australia.
Joel P MackaySchool of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales, Australia.
Lucy A GodleySection of Hematology/Oncology, The University of Chicago, Chicago, Illinois, USA.
Marjorie BrandDepartment of Cell and Regenerative Biology, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, USA.
Jian XuChildren's Medical Center Research Institute, Department of Pediatrics, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Sunduz KelesDepartment of Biostatistics and Biomedical Informatics, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, USA.
Emery H BresnickWisconsin Blood Cancer Research Institute, Department of Cell and Regenerative Biology, Carbone Cancer Center, and.
University of Wisconsin–Madison · USUniversity of Wisconsin Carbone Cancer Center · USThe University of Sydney · AUOttawa Hospital · CAThe University of Texas Southwestern Medical Center · USUniversity of Chicago · USUniversity of Oxford · GB

Funding

UW COMPREHENSIVE CANCER CENTER SUPPORTP30CA014520 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI Justine Yang Bruce · 1985 to 2026
$142.6M
Shared Resources Core 2: Quantitative Proteomics CoreP01CA196539 · NCI · ROCKEFELLER UNIVERSITY · PI YOUNG, MICHAEL WARREN · 2015 to 2024
$17.6M
Hematopoietic Regulation via GATA SwitchesR01DK068634 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI Emery H. Bresnick · 2006 to 2026
$7.5M
Transcriptional Control of Hemoglobin Synthesis and Erythrocyte DevelopmentR01DK050107 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI Emery H. Bresnick · 1996 to 2026
$6.1M
Statistical Methods for the Analysis of ChlP-chip DataR01HG003747 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI KELES, SUNDUZ · 2007 to 2024
$4.8M
Molecular Analysis of Transcriptional Enhancers in HematopoiesisR01DK111430 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI Jian Xu · 2016 to 2026
$4.8M
The role of inflammation in driving leukemogenesis in germline predisposition syndromesU01CA257666 · NCI · UNIVERSITY OF CHICAGO · PI AGARWAL, ANUPRIYA, BRESNICK, EMERY H. · 2022 to 2025
$2.5M
Elucidating the Functional and Mechanistic Roles of LINE-1 Retrotransposons in Myeloid LeukemiaR01CA259581 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Jian Xu · 2022 to 2026
$2.3M
Targeting Metabolic Liabilities of Leukemia-Initiating Cells (R01CA230631)R01CA230631 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI XU, JIAN · 2019 to 2023
$1.8M
Elucidating the transcriptional mechanisms that control the expression of the SARS-CoV-2 receptor ACE2R21AI158240 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI XU, JIAN · 2021 to 2021
$441k
NCI NIH HHS P01 CA196539NCI NIH HHS P30 CA014520NCI NIH HHS R01 CA230631NCI NIH HHS R01 CA259581NCI NIH HHS U01 CA257666NHGRI NIH HHS R01 HG003747NIAID NIH HHS R21 AI158240NIDDK NIH HHS R01 DK050107NIDDK NIH HHS R01 DK068634NIDDK NIH HHS R01 DK111430Wellcome Trust 209181/Z/17/Z
6 · The paper itself

Abstract

Although certain human genetic variants are conspicuously loss of function, decoding the impact of many variants is challenging. Previously, we described a patient with leukemia predisposition syndrome (GATA2 deficiency) with a germline GATA2 variant that inserts 9 amino acids between the 2 zinc fingers (9aa-Ins). Here, we conducted mechanistic analyses using genomic technologies and a genetic rescue system with Gata2 enhancer-mutant hematopoietic progenitor cells to compare how GATA2 and 9aa-Ins function genome-wide. Despite nuclear localization, 9aa-Ins was severely defective in occupying and remodeling chromatin and regulating transcription. Variation of the inter-zinc finger spacer length revealed that insertions were more deleterious to activation than repression. GATA2 deficiency generated a lineage-diverting gene expression program and a hematopoiesis-disrupting signaling network in progenitors with reduced granulocyte-macrophage colony-stimulating factor (GM-CSF) and elevated IL-6 signaling. As insufficient GM-CSF signaling caused pulmonary alveolar proteinosis and excessive IL-6 signaling promoted bone marrow failure and GATA2 deficiency patient phenotypes, these results provide insight into mechanisms underlying GATA2-linked pathologies.

Indexed as

GATA2 DeficiencyGranulocyte-Macrophage Colony-Stimulating FactorGATA2 Transcription FactorGene ExpressionHematopoiesisHumansInterleukin-6Zinc FingersGATA2 protein, humanGATA2 Transcription FactorGranulocyte-Macrophage Colony-Stimulating FactorInterleukin-6GeneticsGenetic variationHematologySignal transductionTranscription

Identifiers

PMID36809258
PMCPMC10065080
OpenAlexW4321445548

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.