Evidence map›Paper›PMID 36812312›Full record

ArticleScience advances2023

Ring-stacked capsids of white spot syndrome virus and structural transitions with genome ejection.

Meiling Sun, Mingdong Liu, Hong Shan, Kang Li, Peng Wang, Huarong Guo, Yaqi Zhao, Rui Wang, Yiwen Tao, Liuyan Yang and 8 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 1 country.

Meiling SunFrontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China.ORCID 0000-0003-1207-0535
Mingdong LiuSchool of Life Science, Department of Biology, Southern University of Science and Technology, Shenzhen 518055, China.ORCID 0000-0002-5321-3208
Hong ShaniHuman Institute and School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.ORCID 0000-0003-3572-8774
Kang LiLaboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China.ORCID 0000-0002-9141-860X
Peng WangFrontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China.ORCID 0000-0002-4983-9953
Huarong GuoKey Laboratory of Marine Genetics and Breeding, Ministry of Education, College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China.ORCID 0000-0002-4850-6209
Yaqi ZhaoKey Laboratory of Marine Genetics and Breeding, Ministry of Education, College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China.ORCID 0000-0003-1409-299X
Rui WangiHuman Institute and School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.
Yiwen TaoKey Laboratory of Marine Genetics and Breeding, Ministry of Education, College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China.
Liuyan YangState Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, Qingdao 266237, China.ORCID 0000-0003-0487-9246
Ying ZhangiHuman Institute and School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.
Xiaoming SuHigh Performance Computing Center, Shanghai Jiao Tong University, Shanghai 200240, China.
Yunhui LiuSchool of Life Science, Department of Biology, Southern University of Science and Technology, Shenzhen 518055, China.
Chunyang LiFrontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China.ORCID 0000-0002-1151-4897
James LinHigh Performance Computing Center, Shanghai Jiao Tong University, Shanghai 200240, China.
Xiu-Lan ChenState Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, Qingdao 266237, China.
Yu-Zhong ZhangFrontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China.ORCID 0000-0002-2017-1005
Qing-Tao ShenSchool of Life Science, Department of Biology, Southern University of Science and Technology, Shenzhen 518055, China.ORCID 0000-0003-1672-6300
Shandong University · CNOcean University of China · CNSouthern University of Science and Technology · CNShanghai Jiao Tong University · CNShanghaiTech University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

White spot syndrome virus (WSSV) is one of the largest DNA viruses and the major pathogen responsible for white spot syndrome in crustaceans. The WSSV capsid is critical for genome encapsulation and ejection and exhibits the rod-shaped and oval-shaped structures during the viral life cycle. However, the detailed architecture of the capsid and the structural transition mechanism remain unclear. Here, using cryo-electron microscopy (cryo-EM), we obtained a cryo-EM model of the rod-shaped WSSV capsid and were able to characterize its ring-stacked assembly mechanism. Furthermore, we identified an oval-shaped WSSV capsid from intact WSSV virions and analyzed the structural transition mechanism from the oval-shaped to rod-shaped capsids induced by high salinity. These transitions, which decrease internal capsid pressure, always accompany DNA release and mostly eliminate the infection of the host cells. Our results demonstrate an unusual assembly mechanism of the WSSV capsid and offer structural insights into the pressure-driven genome release.

Indexed as

CapsidWhite spot syndrome virus 1Capsid ProteinsCryoelectron MicroscopyCapsid Proteins

Identifiers

PMID36812312
PMCPMC9946344
OpenAlexW4321481229

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.