Evidence map›Paper›PMID 36813795›Full record

ArticleNature communications2023

Antigen footprint governs activation of the B cell receptor.

Alexey Ferapontov, Marjan Omer, Isabelle Baudrexel, Jesper Sejrup Nielsen, Daniel Miotto Dupont, Kristian Juul-Madsen, Philipp Steen, Alexandra S Eklund, Steffen Thiel, Thomas Vorup-Jensen and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Full reach at arm's length.Biophysical journal · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Alexey Ferapontov *Department of Biomedicine, Aarhus University, Aarhus C, Denmark.ORCID 0000-0002-6891-9684
Marjan Omer *Center for Cellular Signal Patterns (CellPAT), Aarhus University, Aarhus C, Denmark.ORCID 0000-0002-7557-5664
Isabelle BaudrexelCenter for Cellular Signal Patterns (CellPAT), Aarhus University, Aarhus C, Denmark.ORCID 0000-0002-3422-8340
Jesper Sejrup NielsenCenter for Cellular Signal Patterns (CellPAT), Aarhus University, Aarhus C, Denmark.
Daniel Miotto DupontCenter for Cellular Signal Patterns (CellPAT), Aarhus University, Aarhus C, Denmark.ORCID 0000-0003-1378-1670
Kristian Juul-MadsenDepartment of Biomedicine, Aarhus University, Aarhus C, Denmark.ORCID 0000-0002-5309-5221
Philipp SteenMax Planck Institute of Biochemistry, Martinsried, Germany.ORCID 0000-0002-1454-9390
Alexandra S EklundCenter for Cellular Signal Patterns (CellPAT), Aarhus University, Aarhus C, Denmark.ORCID 0000-0003-1047-2100
Steffen ThielDepartment of Biomedicine, Aarhus University, Aarhus C, Denmark.ORCID 0000-0002-4817-155X
Thomas Vorup-JensenDepartment of Biomedicine, Aarhus University, Aarhus C, Denmark.ORCID 0000-0002-4140-6563
Ralf JungmannCenter for Cellular Signal Patterns (CellPAT), Aarhus University, Aarhus C, Denmark.ORCID 0000-0003-4607-3312
Jørgen KjemsCenter for Cellular Signal Patterns (CellPAT), Aarhus University, Aarhus C, Denmark.
Søren Egedal DegnDepartment of Biomedicine, Aarhus University, Aarhus C, Denmark. sdegn@biomed.au.dk.ORCID 0000-0001-5409-045X
Aarhus University · DKCenter for NanoScience · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Antigen binding by B cell receptors (BCR) on cognate B cells elicits a response that eventually leads to production of antibodies. However, it is unclear what the distribution of BCRs is on the naïve B cell and how antigen binding triggers the first step in BCR signaling. Using DNA-PAINT super-resolution microscopy, we find that most BCRs are present as monomers, dimers, or loosely associated clusters on resting B cells, with a nearest-neighbor inter-Fab distance of 20-30 nm. We leverage a Holliday junction nanoscaffold to engineer monodisperse model antigens with precision-controlled affinity and valency, and find that the antigen exerts agonistic effects on the BCR as a function of increasing affinity and avidity. Monovalent macromolecular antigens can activate the BCR at high concentrations, whereas micromolecular antigens cannot, demonstrating that antigen binding does not directly drive activation. Based on this, we propose a BCR activation model determined by the antigen footprint.

Indexed as

AntigensReceptors, Antigen, B-CellB-LymphocytesLymphocyte ActivationSignal TransductionAntigensReceptors, Antigen, B-Cell

Identifiers

PMID36813795
PMCPMC9947222
OpenAlexW4321487662

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.